Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2021-04-30 |  |
FIB-SEM of Tuwongella immobilis - a species of the Planctomycetes phylum [1 multi-frame micrographs composed of 464 frames each in TIFF format] | Andersson SGE, Odelgard A, Dyrhage K, Mahajan M, Seeger C [DOI: 10.3389/fmicb.2021.643045] |
6.7 GB | — |
| 2021-04-30 |  |
FIB-SEM of Gemmata obscuriglobus - a species of the Planctomycetes phylum [1 stitched maps in TIFF format] | Seeger C, Dyrhage K, Mahajan M, Odelgard A, Bergström Lind S, Andersson SGE [DOI: 10.3389/fmicb.2021.643045] |
1.6 GB | — |
| 2023-03-13 |  |
FIB-SEM images about Control/OPA1 KD NIH-3T3 cells [1984 multi-frame micrographs composed of 1 frames each in TIFF format] | Suga S, Nakamura K, Kawai H, Hirabayashi Y [DOI: 10.1101/2021.06.11.448083] |
46.8 GB | — |
| 2024-12-02 |  |
FIB-SEM datasets of hippocampal neurons from WT and FAM92A1 knockout mice [multiple data sets in TIFF format] | Vihinen H, Jokitalo E, Wang L [Pubmed: 39043703] [DOI: 10.1038/s41467-024-50565-w] |
73.6 GB | — |
| 2024-02-15 |  |
FIB-SEM dataset showing localization of a Golgi matrix protein GM130 in human hepatocellular carcinoma cell (Huh-7) [564 reconstructed volumes in TIFF format] | Belevich I, Jokitalo E | 1.1 GB | — |
| 2024-02-15 |  |
FIB-SEM dataset of a human bone osteosarcoma epithelial cell (U2-OS) [1168 micrographs in TIFF format] | Belevich I, Schertel A, Zaversek T, Szyrynska N, Saarnio S, Jokitalo E [Pubmed: 38609529] [DOI: 10.1038/s41556-024-01381-3] |
5.2 GB | — |
| 2025-06-30 |  |
FIB-SEM Trypanosoma cruzi cell samples [multiple data sets in TIFF and PNG formats] | Slamková D., Hurník Konečná T, Sviben S | 10.8 GB | — |
| 2025-06-30 |  |
FIB-SEM Nicotiana benthamiana epidermal cell - conventional acquisition [200 reconstructed volumes in TIFF format] | Czymmek KJ, Burch-Smith T, Hurník Konečná T [DOI: 10.1016/bs.mcb.2023.04.008] |
7.5 GB | — |
| 2025-06-30 |  |
FIB-SEM Chinese Hamster Ovary cell line sample dataset [multiple data sets in TIFF and PNG formats] | Slamková D., Hurník Konečná T [DOI: 10.1016/bs.mcb.2023.04.008] |
1.3 GB | — |
| 2020-10-14 |  |
FIB SEM images of a Zebrafish hindbrain macrophage containing 2 Toxoplasma gondii tachizoites [multiple data sets in TIFF format] | Peddie CJ, Domart MC, Collinson L [Pubmed: 32461265] [DOI: 10.1242/dmm.043091] |
1.1 TB | — |
| 2024-09-23 |  |
FAST-EM array tomography data of wild-type MCF-7 cells prepared with the rOTO protocol and stained with uranyl acetate [5595 micrographs in TIFF format] | Kievits AJ, Duinkerken BHP, Lane R, de Heus C, van Beijeren Bergen en Henegouwen D, Höppener T, Wolters AHG, Liv N, Giepmans BNG, Hoogenboom JP | 561.3 GB | — |
| 2024-08-29 |  |
FAST-EM array tomography data of rat pancreas prepared with rOTO protocol and stained with neodymium acetate [688 micrographs in TIFF format] | Kievits AJ, Duinkerken BHP, Lane R, de Heus C, van Beijeren Bergen en Henegouwen D, Höppener T, Wolters AHG, Liv N, Giepmans BNG, Hoogenboom JP [Pubmed: 39119255] [DOI: 10.1515/mim-2024-0005] |
69.7 GB | — |
| 2024-11-19 |  |
FAST-EM array tomography data of rat pancreas prepared with rOTO protocol and stained with neodymium acetate [4805 micrographs in TIFF format] | Kievits AJ, Duinkerken BHP, Lane R, de Heus C, van Beijeren Bergen en Henegouwen D, Höppener T, Wolters AHG, Liv N, Giepmans BNG, Hoogenboom JP [Pubmed: 39119255] [DOI: 10.1515/mim-2024-0005] |
479.6 GB | — |
| 2020-08-25 |  |
FAK structure from single particle analysis of 2D crystals [multiple data sets in MRC, TIFF and MRCS formats] | Acebron I, Righetto RD, Biyani N, Chami M, Boskovic J, Stahlberg H, Lietha D [Pubmed: 32779739] [DOI: 10.15252/embj.2020104743] |
1.8 TB | 5.96 - 6.32 Å |
| 2023-10-06 |  |
Extracellular filaments of Pyrobaculum calidifontis [18019 multi-frame micrographs composed of 40 frames each in TIFF format] | Cvirkaite-Krupovic V, Egelman EH, Krupovic M, Wang F [Pubmed: 35727984] [DOI: 10.1073/pnas.2207037119] |
3.7 TB | 3.8 - 4.1 Å |
| 2019-06-19 |  |
Extracellular albumin and endosomal ions prime enterovirus particles for uncoating that can be prevented by fatty acid saturation [multiple data sets in MRC format] | Domanska A, Ruokolainen VP, Pelliccia M, Laajala MA, Marjomäki VS, Butcher SJ [Pubmed: 31189702] [DOI: 10.1128/JVI.00599-19] |
2.4 TB | 3.5 - 3.6 Å |
| 2024-08-23 |  |
Exploring the 3D structure of chromosomes in mitotic cells [multiple data sets in TIFF and DM4 formats] | Cisneros- Soberanis F, Beckett AJ, Simpson E, Pucekova N, Prior IA, Booth DG, Earnshaw WC [Pubmed: 39186086] [DOI: 10.1083/jcb.202403165] |
31.6 GB | — |
| 2024-03-18 |  |
Ex vivo murine AApoAII amyloid fibril [3083 multi-frame micrographs composed of 40 frames each in TIFF format] | Andreotti S, Schmidt M, Fändrich M [Pubmed: 38199491] [DOI: 10.1016/j.jmb.2024.168441] |
510.6 GB | 2.4 - 2.6 Å |
| 2023-02-15 |  |
Escherichia coli gyrase holocomplex with 217 bp phage Mu SGS DNA and albicidin stabilised by ADPNP [14469 multi-frame micrographs composed of 40 frames each in TIFF format] | Michalczyk E, Ghilarov D [Pubmed: 36741192] [DOI: 10.1038/s41929-022-00904-1] |
5.1 TB | 3.06 Å |
| 2023-06-13 |  |
Escherichia coli gyrase holocomplex with 217 bp phage Mu SGS DNA and Albi-2 stabilised by ADPNP [11579 multi-frame micrographs composed of 40 frames each in TIFF format] | Michalczyk E, Ghilarov D [Pubmed: 36741192] [DOI: 10.1038/s41929-022-00904-1] |
4.0 TB | 3.25 Å |
| 2023-06-13 |  |
Escherichia coli gyrase holocomplex with 217 bp phage Mu SGS DNA and Albi-1 stabilised by ADPNP [8136 multi-frame micrographs composed of 40 frames each in TIFF format] | Michalczyk E, Ghilarov D [Pubmed: 36741192] [DOI: 10.1038/s41929-022-00904-1] |
2.9 TB | 3.25 - 3.3 Å |
| 2024-04-12 |  |
Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV) [9711 multi-frame micrographs composed of 39 frames each in MRC format] | Rybak MY, Gagnon MG [Pubmed: 38538914] [DOI: 10.1038/s41594-024-01236-3] |
6.8 TB | 3.1 Å |
| 2024-04-12 |  |
Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II) [10734 multi-frame micrographs composed of 20 frames each in MRC format] | Rybak MY, Gagnon MG [Pubmed: 38538914] [DOI: 10.1038/s41594-024-01236-3] |
4.1 TB | 3.1 Å |
| 2024-04-12 |  |
Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the cognate AUA codon (Structure I) [10381 multi-frame micrographs composed of 39 frames each in MRC format] | Rybak MY, Gagnon MG [Pubmed: 38538914] [DOI: 10.1038/s41594-024-01236-3] |
7.2 TB | 2.9 Å |
| 2024-04-12 |  |
Escherichia coli 70S ribosome in complex with A-site tRNAIle(LAU) bound to the cognate AUA codon (Structure III) [13536 multi-frame micrographs composed of 39 frames each in MRC format] | Rybak MY, Gagnon MG [Pubmed: 38538914] [DOI: 10.1038/s41594-024-01236-3] |
9.4 TB | 2.8 Å |
