Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2019-05-01 |  |
Structure of NDH the complex I-like molecule of photosynthesis [multiple data sets in TIFF format] | Laughlin TG, Bayne AN, Trempe JF, Savage DF, Davies KM [Pubmed: 30742075] [DOI: 10.1038/s41586-019-0921-0] |
1.8 TB | 3.1 - 3.8 Å |
| 2019-12-19 |  |
Structure of a synthetic beta-carboxysome shell [1343 multi-frame micrographs composed of 25 frames each in TIFF format] | Laughlin TG [Pubmed: 31501298] [DOI: 10.1104/pp.19.00885] |
423.5 GB | 2.6 - 4.1 Å |
| 2022-11-28 |  |
Cryo-electron tomography of FIB-milled Caulobacter crescentus expressing WT PopZ [multiple data sets in MRC and TIFF formats] | Lasker K, Lam V, Villa E [Pubmed: 36163138] [DOI: 10.1038/s41467-022-33221-z] |
7.1 GB | — |
| 2023-01-16 |  |
Cryo-electron tomography of FIB-milled Caulobacter crescentus expressing PopZ with IDR-156 and pentavalent OD [multiple data sets in MRC and TIFF formats] | Lasker K, Lam V, Villa E [Pubmed: 36163138] [DOI: 10.1038/s41467-022-33221-z] |
5.9 GB | — |
| 2023-01-16 |  |
Cryo-electron tomography of FIB-milled Caulobacter crescentus expressing PopZ with IDR-156 [multiple data sets in MRC and TIFF formats] | Lasker K, Lam V, Villa E [Pubmed: 36163138] [DOI: 10.1038/s41467-022-33221-z] |
5.5 GB | — |
| 2021-10-22 |  |
Cryo electron micrographs of Pol delta-PCNA-DNA-FEN1 sample [5073 multi-frame micrographs composed of 45 frames each in TIFF format] | Lancey C, Tehseen M, Raducanu VS, Rashid F, Merino N, Ragan TJ, Savva CG, Zaher MS, Shirbini A, Blanco FJ, Hamdan SM, De Biasio A [Pubmed: 32111820] [DOI: 10.1038/s41467-020-14898-6] |
1.6 TB | 3.08 - 4.05 Å |
| 2021-10-26 |  |
Cryo electron micrographs of Pol delta-DNA-PCNA giving rise to various PCNA tilt angles [multiple data sets in MRC format] | Lancey C, Tehseen M, Raducanu VS, Rashid F, Merino N, Ragan TJ, Savva CG, Zaher MS, Shirbini A, Blanco FJ, Hamdan SM, De Biasio A [Pubmed: 32111820] [DOI: 10.1038/s41467-020-14898-6] |
3.6 TB | 4.27 - 8.1 Å |
| 2022-02-07 |  |
Cryo-EM multiframe micrographs of human Pol kappa complexed with DNA and wildtype PCNA [multiple data sets in TIFF format] | Lancey C, Tehseen M, Bakshi S, Percival M, Takahashi M, Sobhy MA, Raducanu VS, Blair K, Muskett FW, Ragan TJ, Crehuet R, Hamdan SM, De Biasio A [Pubmed: 34667155] [DOI: 10.1038/s41467-021-26251-6] |
4.2 TB | 3.4 Å |
| 2022-02-07 |  |
Cryo-EM multiframe micrographs of human Pol kappa complexed with DNA and monoubiquitylated PCNA [3889 multi-frame micrographs composed of 45 frames each in TIFF format] | Lancey C, Tehseen M, Bakshi S, Percival M, Takahashi M, Sobhy MA, Raducanu VS, Blair K, Muskett FW, Ragan TJ, Crehuet R, Hamdan SM, De Biasio A [Pubmed: 34667155] [DOI: 10.1038/s41467-021-26251-6] |
1.9 TB | 6.4 Å |
| 2020-05-01 |  |
SARS-CoV-2 productively infects human gut enterocytes [multiple data sets in TIFF format] | Lamers MM, Beumer J, van der Vaart J, Knoops K, Puschhof J, Breugem T, Ravelli RBG, van Schayck JP, Mykytyn AZ, Duimel HQ, van Donselaar E, Riesebosch S, Kuijpers HJH, Schipper D, van de Wetering WJ, de Graaf M, Koopmans M, Cuppen E, Peters PJ, Haagmans B, Clevers H [Pubmed: 32358202] [DOI: 10.1126/science.abc1669] |
156.2 GB | — |
| 2021-08-27 |  |
Cryo-electron tomography of JCVI-Syn3A (large cell) [multiple data sets in MRC and TIFF formats] | Lam V, Villa E, Thornburg ZR [Pubmed: 34368224] [DOI: 10.3389/fmolb.2021.644133] |
6.5 GB | — |
| 2021-08-20 |  |
Cryo-electron tomography of JCVI-Syn3A (small cell) [multiple data sets in MRC and TIFF formats] | Lam V, Villa E, Thornburg ZR [Pubmed: 34368224] [DOI: 10.3389/fmolb.2021.644133] |
6.4 GB | — |
| 2023-10-23 |  |
High-throughput electron tomography identifies centriole over-elongation in plasma cell disorders [multiple data sets in MRC format] | Köhrer S, Dittrich T, Schorb M, Weinhold N, Haberbosch I, Börmel M, Pajor G, Goldschmidt H, Müller-Tidow C, Raab MS, John L, Seckinger A, Brobeil A, Dreger P, Tornóczky T, Pajor L, Hegenbart U, Schönland SO, Schwab Y, Krämer A [Pubmed: 37821581] [DOI: 10.1038/s41375-023-02056-y] |
7.7 TB | — |
| 2022-11-18 |  |
A high-throughput electron tomography workflow reveals over-elongated centrioles in relapsed-refractory multiple myeloma [multiple data sets in MRC format] | Köhrer S, Dittrich T, Schorb M, Weinhold N, Haberbosch I, Börmel M, Pajor G [Pubmed: 36452870] [DOI: 10.1016/j.crmeth.2022.100322] |
2.0 TB | — |
| 2022-02-15 |  |
Structure of human pannexin-1 in nanodisc [2843 multi-frame micrographs composed of 20 frames each in MRC format] | Kuzuya M, Hirano H, Hayashida K, Watanabe M, Kobayashi K, Terada T, Mahmood MI, Tama F, Tani K, Fujiyoshi Y, Oshima A [Pubmed: 35133866] [DOI: 10.1126/scisignal.abg6941] |
1.2 TB | 3.6 Å |
| 2022-02-07 |  |
Structure of human pannexin-1 with a blocked pore [1480 multi-frame micrographs composed of 19 frames each in TIFF format] | Kuzuya M, Hirano H, Hayashida K, Watanabe M, Kobayashi K, Terada T, Mahmood MI, Tama F, Tani K, Fujiyoshi Y, Oshima A [Pubmed: 35133866] [DOI: 10.1126/scisignal.abg6941] |
459.1 GB | 3.4 Å |
| 2022-02-08 |  |
Structure of C-terminal deleted human pannexin-1 in nanodisc [2383 multi-frame micrographs composed of 20 frames each in TIFF format] | Kuzuya M, Hirano H, Hayashida K, Watanabe M, Kobayashi K, Terada T, Mahmood MI, Tama F, Tani K, Fujiyoshi Y, Oshima A [Pubmed: 35133866] [DOI: 10.1126/scisignal.abg6941] |
784.4 GB | 3.6 Å |
| 2022-02-15 |  |
Structure of N-terminal deleted human pannexin-1 in nanodisc [3841 micrographs in MRC format] | Kuzuya M, Hirano H, Hayashida K, Watanabe M, Kobayashi K, Terada T, Mahmood MI, Tama F, Tani K, Fujiyoshi Y, Oshima A [Pubmed: 35133866] [DOI: 10.1126/scisignal.abg6941] |
203.7 GB | 4.5 Å |
| 2023-08-18 |  |
Single particle cryoEM of cannabinoid receptor 1/G protein complex bound to an endocannabinoid analogue [8332 multi-frame micrographs composed of 57 frames each in TIFF format] | Kumar KK, Robertson MJ, Skiniotis G, Kobilka BK [Pubmed: 37160876] [DOI: 10.1038/s41467-023-37864-4] |
5.2 TB | 2.8 Å |
| 2024-04-17 |  |
Cryo EM of ABC transporter KpsMT(E151Q) in complex with KpsE - ATP-bound state [multiple data sets in TIFF format] | Kuklewicz J [Pubmed: 38570679] [DOI: 10.1038/s41586-024-07248-9] |
2.3 TB | 3.1 - 3.3 Å |
| 2024-04-17 |  |
Cryo EM of ABC transporter KpsMT in complex with KpsE - Apo 2, Glycolipid 1 and Glycolipid 2 states [13961 multi-frame micrographs composed of 40 frames each in TIFF format] | Kuklewicz J [Pubmed: 38570679] [DOI: 10.1038/s41586-024-07248-9] |
3.6 TB | 3.3 - 3.5 Å |
| 2019-02-01 |  |
Cryo electron micrographs of RNA polymerase II transcribing a nucleosome [2719 multi-frame micrographs composed of 40 frames each in TIFF format] | Kujirai T, Ehara H, Fujino Y, Shirouzu M, Sekine S, Kurumizaka H [Pubmed: 30287617] [DOI: 10.1126/science.aau9904] |
1.4 TB | 7.0 Å |
| 2024-03-18 |  |
Cryo-EM structure of the human GBP1 dimer bound to GDP-AlF3 [5215 multi-frame micrographs composed of 50 frames each in TIFF format] | Kuhm TI, Jakobi AJ | 2.8 TB | 3.7 Å |
| 2015-02-26 |  |
VipA/VipB, sheath of the bacterial type IV secretion system, micrographs for helical reconstruction taken on a K2 detector [77 micrographs in MRC format] | Kudryashev M, Wang R, Brackmann M, Scherer S, Maier T, DiMaio F, Baker D, Stahlberg H, Egelman EH, Basler M [Pubmed: 25723169] [DOI: 10.1016/j.cell.2015.01.037] |
4.1 GB | 3.5 Å |
| 2016-01-14 |  |
Cryo electron tomography of mouse 5-HT3 receptors in lipid vesicles [46 class averages in MRC format] | Kudryashev M, Castano-Diez D, Deluz C, Hassaine G, Grasso L, Graf-Meyer A, Vogel H, Stahlberg H [Pubmed: 26724993] [DOI: 10.1016/j.str.2015.11.004] |
158.8 GB | 12.0 Å |
