오사카 대학의 EMPIAR-PDBj 팀은, 아시아의 EM 연구자가 용량이 큰 EM 이미지를 EMPIAR 데이터베이스에 전송하는 것을 돕고 있습니다. 인터넷을 통하여 EBI (UK)에 직>접 데이터를 전송하는 대신, 이용자는 우편이나 택배를 통하여 하드 디스크를 오사카 대학으로 보내실 수 있습니다. 혹은 인터넷을 이용하여 오사카 대학의 서버로 전>송 하실 수 있습니다. 오사카 대학에 데이터 전송 서비스를 희망하시는 분은 데이터를 보내시기 전에 먼저 이메일 통하여 등록하시고 싶은 EM데이터에 관하여 상담하십시오.
Release date | Imageset | Title | Authors and references | Size | Resolution |
---|---|---|---|---|---|
2021-10-01 | Training data set for automated 2D class selection [18051 class averages in MRCS format] | Kimanius D, Dong L, Sharov G, Nakane T, Scheres SHW [Pubmed: 34783343] [DOI: 10.1042/bcj20210708] |
20.7 GB | — | |
2022-11-07 | Topological Crossing in the Misfolded Tetrahymena Ribozyme Resolved by Cryo-EM [42382 micrographs in MRC format] | Li S, Palo M, Pintilie GD, Zhang X, Su Z, Kappel K, Chiu W, Zhang K, Das R [Pubmed: 36067294] [DOI: 10.1073/pnas.2209146119] |
3.6 TB | 3.01 - 4.01 Å | |
2023-02-13 | Tobacco mosaic virus, imaged on a JEOL CRYOARM 300 and Direct Electron Apollo [3402 multi-frame micrographs composed of 45 frames each in TIFF format] | Bhella D, Love AJ, Streetley J, Taliansky M, McGeachy K, Bukharova T | 1.1 TB | 1.85 Å | |
2015-01-16 | Tobacco Mosaic Virus K2 Summit dataset including manually boxed helix coordinates [14 multi-frame micrographs composed of 22 frames each in MRC format] | Fromm SA, Bharat TAM, Jakobi AJ, Hagen WJH, Sachse C [Pubmed: 25528571] [DOI: 10.1016/j.jsb.2014.12.002] |
15.7 GB | 4.0 Å | |
2015-01-16 | Tobacco Mosaic Virus Falcon II dataset including manually boxed helix coordinates [28 multi-frame micrographs composed of 16 frames each in MRC format] | Fromm SA, Bharat TAM, Jakobi AJ, Hagen WJH, Sachse C [Pubmed: 25528571] [DOI: 10.1016/j.jsb.2014.12.002] |
28.0 GB | 3.7 Å | |
2015-01-16 | Tobacco Mosaic Virus Falcon II dataset including manually boxed helix coordinates [109 multi-frame micrographs composed of 7 frames each in MRC format] | Fromm SA, Bharat TAM, Jakobi AJ, Hagen WJH, Sachse C [Pubmed: 25528571] [DOI: 10.1016/j.jsb.2014.12.002] |
47.7 GB | 3.35 - 4.2 Å | |
2022-09-09 | Tiltseries of Coxiella burnetii [35 tilt series in MRC format] | Park D, Steiner S, Shao M, Roy CR, Liu J [Pubmed: 36190257] [DOI: 10.1128/iai.00410-22] |
1.1 TB | 11.0 Å | |
2021-07-23 | Tilt-series taken from SARS-CoV-2 infected Vero cells. [multiple data sets in MRC format] | Mendonça L, Howe A, Gilchrist JB, Sheng Y, Sun D, Knight ML, Zanetti-Domingues LC, Bateman B, Krebs AS, Chen L, Radecke J, Li VD, Ni T, Kounatidis I, Koronfel MA, Szynkiewicz M, Harkiolaki M, Martin-Fernandez ML, James W, Zhang P [Pubmed: 34330917] [DOI: 10.1038/s41467-021-24887-y] |
52.7 GB | 10.6 - 16.0 Å | |
2018-02-08 | Tilt-series of salmonella enterica wild-type bacterial flagellar motor [1 tilt series in MRC format] | Beeby M, Ribardo DA, Brennan CA, Ruby EG, Jensen GJ, Hendrixson DR [Pubmed: 26976588] [DOI: 10.1073/pnas.1518952113] |
328.0 MB | 69.4 Å | |
2018-01-24 | Tilt-series of e. coli carrying the ple7 plasmid carrying YFP-MreB induced with 20 uM IPTG [7 tilt series in MRC format] | Swulius MT, Jensen GJ [Pubmed: 22904287] [DOI: 10.1128/JB.00505-12] |
6.6 GB | — | |
2018-01-24 | Tilt-series of e. coli carrying the ple7 plasmid carrying YFP-MreB hyper-overexpressed by induction with 1uM IPTG [5 tilt series in MRC format] | Swulius MT, Jensen GJ [Pubmed: 22904287] [DOI: 10.1128/JB.00505-12] |
5.0 GB | — | |
2018-01-24 | Tilt-series of e. coli carrying empty ple6 plasmid induced with 20 uM IPTG [4 tilt series in MRC format] | Swulius MT, Jensen GJ [Pubmed: 22904287] [DOI: 10.1128/JB.00505-12] |
3.8 GB | — | |
2020-10-16 | Tilt-series from cryo-lamellae of WT S. cerevisiae cells [multiple data sets in MRC format] | Allegretti M, Zimmerli CE, Rantos V, Wilfling F, Ronchi P, Fung HKH, Lee CW, Hagen W, Turoňová B, Karius K, Börmel M, Zhang X, Müller CW, Schwab Y, Mahamid J, Pfander B, Kosinski J, Beck M [Pubmed: 32879490] [DOI: 10.1038/s41586-020-2670-5] |
605.7 GB | 25.0 Å | |
2017-07-14 | Tilt-series for the electron cryotomogram of Vibrio cholerae O395 N1 [16 tilt series in MRC format] | Chang YW, Kjaer A, Ortega DR, Kovacikova G, Sutherland JA, Rettberg LA, Taylor RK, Jensen GJ [Pubmed: 28165453] [DOI: 10.1038/nmicrobiol.2016.269] |
51.3 GB | 50.0 Å | |
2020-03-02 | Tilt-schemes benchmarking for cryo electron tomography of HIV-1 CA-SP1 [multiple data sets in MRC format] | Turoňová B, Hagen WJH, Obr M, Mosalaganti S, Beugelink JW, Zimmerli CE, Kräusslich HG, Beck M [Pubmed: 32054835] [DOI: 10.1038/s41467-020-14535-2] |
45.6 GB | 4.2 Å | |
2020-12-04 | Tilt series of native M. pneumoniae cells treated with chloramphenicol [2666 tilt series in TIFF format] | Tegunov D, Xue L, Dienemann C, Cramer P, Mahamid J [Pubmed: 33542511] [DOI: 10.1038/s41592-020-01054-7] |
83.8 GB | 3.4 - 3.7 Å | |
2022-11-04 | Tilt series of mouse heavy chain apoferritin acquired on Krios G4 equipped with SelectrisX and Falcon4i [3300 multi-frame micrographs composed of 153 frames each in EER format] | Obr M, Yang W, Karia D, Koh FA, Kotecha A | 131.0 GB | — | |
2021-05-21 | Tilt series of dividing vegetative and sporulating cells of Bacillus subtilis from the manuscript - Khanna et al., 2021 [multiple data sets in MRC format] | Khanna K, Lopez-Garrido J, Sugie J, Pogliano K, Villa E [Pubmed: 34018921] [DOI: 10.7554/eLife.62204] |
8.7 GB | — | |
2023-01-18 | Tilt series of cell-cell contact of two PTK-1 cells [35 tilt series in MRC format] | Lemos M, Bezault A, Sauvanet C, Hanein D, Volkmann N [Pubmed: 36539423] [DOI: 10.1038/s41467-022-35409-9] |
1.1 GB | — | |
2023-03-13 | Tilt series of authentic mumps virus nucleocapsid isolated from lysate of chronically infected HeLa cells under arsenite stress [840 tilt series in TIFF format] | Zhang X, Mahamid J | 27.9 GB | 4.5 - 6.3 Å | |
2022-11-11 | Tilt series of SARS-CoV-2 virions, Wuhan/Alpha/Beta/Delta variants [multiple data sets in MRC format] | Calder LJ, Calcraft T, Hussain S, Harvey R, Rosenthal PB [Pubmed: 36357779] [DOI: 10.1038/s42003-022-04183-1] |
120.5 GB | 27.75 - 44.4 Å | |
2022-10-07 | Tilt series of SARS-CoV-2 spike-bearing virus-like particles (VLPs) interacting with hACE2-bearing extracellular vesicles (tEVs), showing various intermediate states of the SARS-CoV-2 spike protein [6 tilt series in MRC format] | Marcink TC, Porotto M, des Georges A, Moscona A [Pubmed: 35984891] [DOI: 10.1126/sciadv.abo3153] |
9.6 GB | — | |
2022-01-21 | Tilt series of EIAV CASPNC VLPs acquired on Krios G4 with Selectris X and Falcon 4 [multiple data sets in EER and MRC formats] | Obr M, Hagen WJ, Dick RA, Yu L, Kotecha A, Schur FK [Pubmed: 35351542] [DOI: 10.1016/j.jsb.2022.107852] |
461.4 GB | 2.9 - 3.4 Å | |
2022-03-07 | Tilt series of EIAV CASPNC VLPs acquired on Krios G3i with Gatan BioQuantum and K3 [multiple data sets in TIFF and MRC formats] | Obr M, Hagen WJ, Dick RA, Yu L, Kotecha A, Schur FK [Pubmed: 35351542] [DOI: 10.1016/j.jsb.2022.107852] |
106.2 GB | 3.3 - 3.6 Å | |
2022-05-11 | Tilt series and tomograms of cells expressing different non structural proteins (NSPs) of SARS-CoV-2 [multiple data sets in MRC format] | Polshchuk RS, Polishchuk E, De Matteis MA [Pubmed: 35551511] [DOI: 10.1038/s41586-022-04835-6] |
107.1 GB | — |