Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2024-03-26 |  |
Single particle movie data of NAIP5/Flic complex [36143 multi-frame micrographs composed of 50 frames each in TIFF format] | Paidimuddala B, Cao J, Zhang L [Pubmed: 38055825] [DOI: 10.1126/sciadv.adi8539] |
3.1 TB | 2.93 Å |
| 2024-04-02 |  |
Cryo-EM of SARS-CoV-2 5' proximal stem-loops 5-6 [multiple data sets in TIFF and MRC formats] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38427602] [DOI: 10.1073/pnas.2320493121] |
2.8 TB | 7.8 Å |
| 2024-04-02 |  |
Cryo-EM of SARS-CoV-1 5' proximal stem-loop 5 [multiple data sets in TIFF and MRC formats] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38427602] [DOI: 10.1073/pnas.2320493121] |
2.2 TB | 7.1 Å |
| 2024-04-02 |  |
EMinsight: a tool to capture cryoEM microscope configuration and experimental outcomes for analysis and deposition [2605 multi-frame micrographs composed of 50 frames each in TIFF format] | Morris KL, Harrison PJ, Hatton D, Riggs S, Thiyagalingamc J | 1.2 TB | — |
| 2024-04-03 |  |
Structure of the Plasmodium falciparum 20S proteasome beta-6 A117D mutant complexed with inhibitor WLW-vs [24086 multi-frame micrographs composed of 65 frames each in TIFF format] | Hsu HC, Li H [Pubmed: 38097652] [DOI: 10.1038/s41467-023-44077-2] |
11.3 TB | 2.58 Å |
| 2024-04-07 |  |
Cryo-EM of BtCoV-HKU5 5' proximal stem-loop 5 [multiple data sets in TIFF and MRC formats] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38427602] [DOI: 10.1073/pnas.2320493121] |
22.3 TB | 5.9 - 8.0 Å |
| 2024-04-07 |  |
Cryo-EM of SARS-CoV-2 5' proximal stem-loops 5-6 with SL6 extended and SL5a, SL5b, and SL5c removed [16511 multi-frame micrographs composed of 40 frames each in MRC format] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38427602] [DOI: 10.1073/pnas.2320493121] |
20.2 TB | 7.8 Å |
| 2024-04-09 |  |
In situ cryo-ET dataset of Chlamydomonas reinhardtii prepared using cryo-plasmaFIB milling [multiple data sets in EER and MRC formats] | Kelley R, Khavnekar S, Zhang X, Obr M, Chakraborty S, Koh AF, Heebner J, Righetto R, Waltz F, McCafferty C, Van den Hoek H, Wietrzynski W, Van Der Stappen P, Michael A, Van Dorst S, Tagiltsev G, Beck F, Zhong E, Wan W, Briggs J, Plitzko J, Engel B, Kotecha A [Pubmed: 37613825] [DOI: 10.1093/micmic/ozad067.480] |
27.7 TB | — |
| 2024-04-09 |  |
cryo-EM 3D maps of the S. cerevisiae Yta7 bound to ATPgS and histone H3 tail [12138 multi-frame micrographs composed of 75 frames each in TIFF format] | Wang FW [Pubmed: 36592926] [DOI: 10.1016/j.jbc.2022.102852] |
6.9 TB | 3.0 - 3.1 Å |
| 2024-04-09 |  |
Structure of the Plasmodium falciparum 20S proteasome complexed with inhibitor TDI-8304 [29421 multi-frame micrographs composed of 75 frames each in TIFF format] | Hsu HC, Li H [Pubmed: 38097652] [DOI: 10.1038/s41467-023-44077-2] |
16.7 TB | 2.18 Å |
| 2024-04-11 |  |
Cryo-EM structure of P-Rex1-IP4 [multiple data sets in MRCS and TIFF formats] | Ravala SK, Adame-Garcia SR, Li S, Chen CL, Cianfrocco MA, Gutkind JS, Cash JN, Tesmer JJG [DOI: 10.7554/eLife.92822.1] |
2.7 TB | 4.1 Å |
| 2024-04-12 |  |
Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the cognate AUA codon (Structure I) [10381 multi-frame micrographs composed of 39 frames each in MRC format] | Rybak MY, Gagnon MG [Pubmed: 38538914] [DOI: 10.1038/s41594-024-01236-3] |
12.4 TB | 2.9 Å |
| 2024-04-12 |  |
Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II) [10734 multi-frame micrographs composed of 20 frames each in MRC format] | Rybak MY, Gagnon MG [Pubmed: 38538914] [DOI: 10.1038/s41594-024-01236-3] |
6.6 TB | 3.1 Å |
| 2024-04-12 |  |
Escherichia coli 70S ribosome in complex with A-site tRNAIle(LAU) bound to the cognate AUA codon (Structure III) [13536 multi-frame micrographs composed of 39 frames each in MRC format] | Rybak MY, Gagnon MG [Pubmed: 38538914] [DOI: 10.1038/s41594-024-01236-3] |
16.1 TB | 2.8 Å |
| 2024-04-12 |  |
Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV) [9711 multi-frame micrographs composed of 39 frames each in MRC format] | Rybak MY, Gagnon MG [Pubmed: 38538914] [DOI: 10.1038/s41594-024-01236-3] |
11.6 TB | 3.1 Å |
| 2024-04-12 |  |
Structural basis for directional rotation of the Salmonella flagellum [34381 multi-frame micrographs composed of 50 frames each in TIFF format] | Singh PK, Iverson TM | 9.1 TB | 3.4 - 6.7 Å |
| 2024-04-12 |  |
Cryo-electron tomography data of Emiliania huxleyi virus 201 for subtomogram averaging [283 tilt series in TIFF format] | Homola M, Büttner CR, Füzik T, Nováček J, Chaillet M, Förster F, Plevka P [DOI: 10.1101/2023.06.30.547180] |
294.8 GB | 13.0 Å |
| 2024-04-15 |  |
Single-particle cryo-EM unaligned micrographs of NTD-directed neutralizing antibody 5-7 in complex with prefusion SARS-CoV-2 spike glycoprotein [6688 multi-frame micrographs composed of 60 frames each in TIFF format] | Cerutti G, Guo Y, Wang P, Nair MS, Wang M, Huang Y, Yu J, Liu L, Katsamba PS, Bahna F, Reddem ER, Kwong PD, Ho DD, Sheng Z, Shapiro L [Pubmed: 34706271] [DOI: 10.1016/j.celrep.2021.109928] |
1.6 TB | 3.5 Å |
| 2024-04-16 |  |
Mycobacterium phage Adjutor [6667 multi-frame micrographs composed of 30 frames each in TIFF format] | Podgorski JM | 2.0 TB | 2.66 Å |
| 2024-04-17 |  |
Cryo-EM of SARS-CoV-2 5' proximal stem-loops 5-6 with SL5b extended [multiple data sets in MRC format] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38427602] [DOI: 10.1073/pnas.2320493121] |
14.8 TB | 7.4 Å |
| 2024-04-17 |  |
Cryo-EM of MERS 5' proximal stem-loop 5 [multiple data sets in MRC format] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38427602] [DOI: 10.1073/pnas.2320493121] |
16.7 TB | 6.4 - 6.9 Å |
| 2024-04-17 |  |
Structure of human constitutive 20S proteasome complexed with the inhibitor TDI-8304 [16113 multi-frame micrographs composed of 50 frames each in TIFF format] | Hsu HC, Li H [Pubmed: 38097652] [DOI: 10.1038/s41467-023-44077-2] |
6.5 TB | 2.04 Å |
| 2024-04-17 |  |
Structural and quantum chemical basis for OCP-mediated quenching of phycobilisomes [16285 multi-frame micrographs composed of 1176 frames each in EER format] | Sauer PV, Kotecha A, Koh AF [Pubmed: 38578996] [DOI: 10.1126/sciadv.adk7535] |
6.1 TB | 1.63 - 2.2 Å |
| 2024-04-17 |  |
Single-particle cryo-EM unaligned micrographs of NTD-directed neutralizing antibody 2-51 in complex with prefusion SARS-CoV-2 spike glycoprotein [13880 multi-frame micrographs composed of 50 frames each in TIFF format] | Cerutti G, Guo Y, Zhou T, Gorman J, Lee M, Rapp M, Reddem ER, Yu J, Bahna F, Bimela J, Huang Y, Katsamba PS, Liu L, Nair MS, Rawi R, Olia AS, Wang P, Zhang B, Chuang GY, Ho DD, Sheng Z, Kwong PD, Shapiro L [Pubmed: 33789084] [DOI: 10.1016/j.chom.2021.03.005] |
3.5 TB | 3.71 Å |
| 2024-04-17 |  |
CryoEM movies of IAPP-S20G timecourse (3 week, FT24) [495 multi-frame micrographs composed of 40 frames each in TIFF format] | Wilkinson M, Xu Y, Thacker D, Taylor AIP, Fisher DG, Gallardo RU, Radford SE, Ranson NA [Pubmed: 38134875] [DOI: 10.1016/j.cell.2023.11.025] |
70.1 GB | 3.0 Å |
