Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2024-02-13 |  |
Cryo electron microscopy of Virus-like Particle based on PVY coat protein with T43C and D136C mutation [461 multi-frame micrographs composed of 38 frames each in TIFF format] | Kavcic L, Kezar A [Pubmed: 38233506] [DOI: 10.1038/s42004-024-01100-x] |
332.6 GB | 2.41 Å |
| 2024-02-13 |  |
Plant SBF-SEM - Tobacco Leaf Chloroplast [130 micrographs in TIFF format] | Wickramanayake JS, Czymmek KJ [Pubmed: 37451777] [DOI: 10.1016/bs.mcb.2023.04.008] |
544.4 MB | — |
| 2024-02-13 |  |
5-HT2AR bound to a novel agonist in complex with a mini-Gq protein and an active-state stabilizing single-chain variable fragment (scFv16) obtained by cryo-electron microscopy (cryoEM) [7573 multi-frame micrographs composed of 50 frames each in TIFF format] | Barros-Alvarez X, Kim K, Panova O, Roth BL, Skiniotis G [Pubmed: 36171289] [DOI: 10.1038/s41586-022-05258-z] |
3.4 TB | 3.45 Å |
| 2024-02-13 |  |
Cryo-EM structure of the chain-elongating E3 ubiquitin ligase UBR5 [multiple data sets in MRC format] | Hodáková Z, Grishkovskaya I, Haselbach D, Kotisch H [Pubmed: 37409633] [DOI: 10.15252/embj.2022113348] |
2.1 TB | 3.0 Å |
| 2024-02-15 |  |
FIB-SEM dataset showing localization of a Golgi matrix protein GM130 in human hepatocellular carcinoma cell (Huh-7) [564 reconstructed volumes in TIFF format] | Belevich I, Jokitalo E | 1.1 GB | — |
| 2024-02-15 |  |
FIB-SEM dataset of a human bone osteosarcoma epithelial cell (U2-OS) [1168 micrographs in TIFF format] | Belevich I, Schertel A, Zaversek T, Szyrynska N, Saarnio S, Jokitalo E | 5.2 GB | — |
| 2024-02-16 |  |
Cryo-EM reconstruction of the influenza A virus helical ribonucleoprotein-like [26515 multi-frame micrographs composed of 40 frames each in TIFF format] | Chenavier F, Ruigrok RWH, Schoehn G, Ballandras-Colas A, Crépin T [Pubmed: 38100595] [DOI: 10.1126/sciadv.adj9974] |
9.5 TB | 5.3 - 8.7 Å |
| 2024-02-16 |  |
Structure of the human UBR5 HECT-type E3 ubiquitin ligase in a dimeric form [13094 multi-frame micrographs composed of 75 frames each in TIFF format] | Wang FW [Pubmed: 37040767] [DOI: 10.1016/j.str.2023.03.010] |
7.0 TB | 2.66 - 2.8 Å |
| 2024-02-19 |  |
Graphene-sandwiched apoferritin [55 multi-frame micrographs composed of 32 frames each in TIFF format] | Liu N, Xu J, Wang HW [Pubmed: 38252835] [DOI: 10.1073/pnas.2309384121] |
20.2 GB | 3.1 Å |
| 2024-02-19 |  |
Mouse heavy chain apoferritin in vitreous ice after laser-melting and revitrification [10421 multi-frame micrographs composed of 784 frames each in EER format] | Bongiovanni G, Harder OF, Voss JM, Drabbels M, Lorenz UJ [Pubmed: 37219589] [DOI: 10.1107/S2059798323003431] |
2.5 TB | 1.59 Å |
| 2024-02-26 |  |
Graphene-sandwiched 20S proteasome [50 multi-frame micrographs composed of 32 frames each in MRCS format] | Liu N, Xu J, Wang HW [Pubmed: 38252835] [DOI: 10.1073/pnas.2309384121] |
28.9 GB | 2.6 Å |
| 2024-02-28 |  |
Apo Malacoceros FaNaC1 in lipid nanodiscs [multiple data sets in TIFF format] | Kalienkova V, Dandamudi M, Paulino C, Lynagh T [Pubmed: 38337033] [DOI: 10.1038/s41594-023-01198-y] |
1013.1 GB | 2.7 Å |
| 2024-02-28 |  |
FMRFa-bound Malacoceros FaNaC1 in lipid nanodiscs [multiple data sets in TIFF format] | Kalienkova V, Dandamudi M, Paulino C, Lynagh T [Pubmed: 38337033] [DOI: 10.1038/s41594-023-01198-y] |
866.2 GB | 2.5 Å |
| 2024-02-28 |  |
Sulfolobus acidocaldarius s-layer SlaA cryoET dataset [multiple data sets in MRC format] | Gambelli L, McLaren MJ, Sanders K, Gaines M, Clark L, Gold VAM, Kattnig D, Sikora M, Hanus C, Isupov M, Daum B [Pubmed: 38251732] [DOI: 10.7554/eLife.84617] |
945.1 GB | 11.2 Å |
| 2024-02-28 |  |
ASSFVRIa-bound Malacoceros FaNaC1 in lipid nanodiscs [multiple data sets in TIFF format] | Kalienkova V, Dandamudi M, Paulino C, Lynagh T [Pubmed: 38337033] [DOI: 10.1038/s41594-023-01198-y] |
1.3 TB | 2.4 Å |
| 2024-02-28 |  |
FMRFa-bound Malacoceros FaNaC1 in lipid nanodiscs in presence of diminazene [multiple data sets in TIFF format] | Kalienkova V, Dandamudi M, Paulino C, Lynagh T [Pubmed: 38337033] [DOI: 10.1038/s41594-023-01198-y] |
1.3 TB | 3.0 Å |
| 2024-02-28 |  |
Taf15 amyloid filaments - Individual 1, frontal cortex [1980 multi-frame micrographs composed of 1407 frames each in EER format] | Tetter S, Arseni D, Murzin AG, Buhidma Y, Peak-Chew SYPC, Garringer HJ, Newell KL, Vidal R, Apostolova L, Lashley T, Ghetti B, Ryskeldi-Falcon B [Pubmed: 38057661] [DOI: 10.1038/s41586-023-06801-2] |
1.2 TB | 1.97 Å |
| 2024-02-28 |  |
Cryo-EM structure of human TFIIIC bound and unbound to tRNA gene [multiple data sets in TIFF and MRCS formats] | Seifert-Davila W, Girbig M, Hauptmann L, Hoffmann T, Eustermann S, Müller CW [Pubmed: 37418517] [DOI: 10.1126/sciadv.adh2019] |
3.8 TB | 3.2 - 3.8 Å |
| 2024-02-29 |  |
Sulfolobus acidocaldarius s-layer SlaA [multiple data sets in TIFF format] | Gambelli L, McLaren MJ, Sanders K, Gaines M, Clark L, Gold VAM, Kattnig D, Sikora M, Hanus C, Isupov M, Daum B [Pubmed: 38251732] [DOI: 10.7554/eLife.84617] |
4.5 TB | 3.1 - 3.9 Å |
| 2024-02-29 |  |
Cryo electron microscopy of assemblies based on truncated PVY coat protein with K176C mutation [9480 multi-frame micrographs composed of 32 frames each in TIFF format] | Kavcic L, Kezar A [Pubmed: 38233506] [DOI: 10.1038/s42004-024-01100-x] |
957.1 GB | 2.99 - 3.16 Å |
| 2024-02-29 |  |
cryo-EM structure of nucleotide-free rMRP2 [12785 multi-frame micrographs composed of 50 frames each in TIFF format] | Mazza TM, Roumeliotis TIR, Garitta EG, Drew DD, Rashid STR, Indiveri CI, Linton KJL, Choudhary JSC, Beis KB | 2.0 TB | 3.21 Å |
| 2024-02-29 |  |
cryo-EM structure of rMRP2 in complex with probenecid [13827 multi-frame micrographs composed of 40 frames each in TIFF format] | Mazza TM, Roumeliotis TIR, Garitta EG, Drew DD, Rashid STR, Indiveri CI, Linton KJL, Choudhary JSC, Beis KB | 1.9 TB | 3.45 Å |
| 2024-03-16 |  |
Single Particle Cryo Electron Microscopy Structure of the Dsl1 Complex bound to the SNAREs Sec20 and Use1 [multiple data sets in MRC format] | DAmico KD [Pubmed: 38196032] [DOI: 10.1038/s41594-023-01164-8] |
9.7 TB | 4.5 Å |
| 2024-03-17 |  |
Cryo-EM of HCoV-NL63 5' proximal stem-loop 5 [multiple data sets in MRC format] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38076883] [DOI: 10.1101/2023.11.22.567964] |
10.2 TB | 8.4 - 9.0 Å |
| 2024-03-18 |  |
Ex vivo murine AApoAII amyloid fibril [3083 multi-frame micrographs composed of 40 frames each in TIFF format] | Andreotti S, Schmidt M, Fändrich M [Pubmed: 38199491] [DOI: 10.1016/j.jmb.2024.168441] |
510.6 GB | 2.4 - 2.6 Å |
