Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2022-07-27 |  |
Micrographs of IAPP (amylin) amyloid fibrils [1330 micrographs in MRC format] | Röder C, Schröder GF [Pubmed: 32541895] [DOI: 10.1038/s41594-020-0442-4] |
83.1 GB | 4.2 - 8.1 Å |
| 2022-07-27 |  |
PMCA-amplified α-synuclein fibrils, Parkinson's Disease patient-derived seeds [6780 micrographs in MRC format] | Frieg B, Geraets JA, Schröder GF | 595.3 GB | 3.3 Å |
| 2022-07-27 |  |
PMCA-amplified α-synuclein fibrils, Multiple System Atrophy patient-derived seeds [4474 micrographs in MRC format] | Frieg B, Geraets JA, Schröder GF | 392.8 GB | 3.02 Å |
| 2022-07-18 |  |
CryoEM single particle dataset for psNb 2-67 with spike protein [1251 multi-frame micrographs composed of 40 frames each in TIFF format] | Xiang Y, Huang W, Liu H, Sang Z, Nambulli S, Tubiana J, Williams Jr KL, Duprex WP, Schneidman-Duhovny D, Wilson IA, Taylor DJ, Shi Y [Pubmed: 35738279] [DOI: 10.1016/j.celrep.2022.111004] |
699.6 GB | 2.7 Å |
| 2022-07-12 |  |
CryoEM single particle dataset for psNb 2-34 with spike protein [2660 multi-frame micrographs composed of 40 frames each in TIFF format] | Xiang Y, Huang W, Liu H, Sang Z, Nambulli S, Tubiana J, Williams Jr KL, Duprex WP, Schneidman-Duhovny D, Wilson IA, Taylor DJ, Shi Y [Pubmed: 35738279] [DOI: 10.1016/j.celrep.2022.111004] |
1021.3 GB | 2.9 Å |
| 2022-07-12 |  |
CryoEM single particle dataset for psNb 2-38 with spike protein [1901 multi-frame micrographs composed of 40 frames each in TIFF format] | Xiang Y, Huang W, Liu H, Sang Z, Nambulli S, Tubiana J, Williams Jr KL, Duprex WP, Schneidman-Duhovny D, Wilson IA, Taylor DJ, Shi Y [Pubmed: 35738279] [DOI: 10.1016/j.celrep.2022.111004] |
791.0 GB | 2.9 Å |
| 2022-07-18 |  |
Structure of the Dicer-2-R2D2 heterodimer bound to a small RNA duplex [multiple data sets in TIFF format] | Yamaguchi S, Naganuma M, Nishizawa T, Kusakizako T, Tomari Y, Nishimasu H, Nureki O [Pubmed: 35768503] [DOI: 10.1038/s41586-022-04790-2] |
1.4 TB | 3.3 Å |
| 2022-07-12 |  |
CryoEM single particle dataset for psNb 2-57 with spike protein [3485 multi-frame micrographs composed of 40 frames each in TIFF format] | Xiang Y, Huang W, Liu H, Sang Z, Nambulli S, Tubiana J, Williams Jr KL, Duprex WP, Schneidman-Duhovny D, Wilson IA, Taylor DJ, Shi Y [Pubmed: 35738279] [DOI: 10.1016/j.celrep.2022.111004] |
1.4 TB | 2.9 Å |
| 2022-07-27 |  |
Apoferritin structure at 1.46 angstrom resolution by CryoARM300II equipped with Apollo [7000 multi-frame micrographs composed of 24 frames each in TIFF format] | Bammes B, Spilman M, Sakamoto M, Fukumura T, Konyuba Y, Okunish E | 1.1 TB | 1.47 Å |
| 2022-07-18 |  |
CryoEM single particle dataset for psNb 1-8 with spike protein [3147 multi-frame micrographs composed of 40 frames each in TIFF format] | Xiang Y, Huang W, Liu H, Sang Z, Nambulli S, Tubiana J, Williams Jr KL, Duprex WP, Schneidman-Duhovny D, Wilson IA, Taylor DJ, Shi Y [Pubmed: 35738279] [DOI: 10.1016/j.celrep.2022.111004] |
1.9 TB | 2.7 Å |
| 2023-02-28 |  |
Cryo-ET tilt series of HPIV3 clinical isolates [11 tilt series in MRC format] | Marcink T, Porotto M, des Georges A, Moscona A [Pubmed: 36763666] [DOI: 10.1126/sciadv.ade2727] |
33.7 GB | 10.2 Å |
| 2023-02-28 |  |
Cryo-ET tilt series of HPIV3 clinical isolates in the presence of an F neutralizing Fab [6 tilt series in MRC format] | Marcink T, Cheng W, Porotto M, des Georges A, Moscona A [Pubmed: 36763666] [DOI: 10.1126/sciadv.ade2727] |
19.1 GB | 16.5 Å |
| 2022-07-18 |  |
CryoEM single particle dataset for psNb 1-22 with spike protein [3610 multi-frame micrographs composed of 40 frames each in TIFF format] | Xiang Y, Huang W, Liu H, Sang Z, Nambulli S, Tubiana J, Williams Jr KL, Duprex WP, Schneidman-Duhovny D, Wilson IA, Taylor DJ, Shi Y [Pubmed: 35738279] [DOI: 10.1016/j.celrep.2022.111004] |
1.6 TB | 2.3 Å |
| 2022-07-15 |  |
CryoEM single particle dataset for psNb 1-23 with spike protein [1872 multi-frame micrographs composed of 40 frames each in TIFF format] | Xiang Y, Huang W, Liu H, Sang Z, Nambulli S, Tubiana J, Williams Jr KL, Duprex WP, Schneidman-Duhovny D, Wilson IA, Taylor DJ, Shi Y [Pubmed: 35738279] [DOI: 10.1016/j.celrep.2022.111004] |
802.4 GB | 2.9 Å |
| 2022-07-15 |  |
CryoEM single particle dataset for psNb 2-65 with spike protein [1625 multi-frame micrographs composed of 40 frames each in TIFF format] | Xiang Y, Huang W, Liu H, Sang Z, Nambulli S, Tubiana J, Williams Jr KL, Duprex WP, Schneidman-Duhovny D, Wilson IA, Taylor DJ, Shi Y [Pubmed: 35738279] [DOI: 10.1016/j.celrep.2022.111004] |
932.2 GB | 3.2 Å |
| 2022-07-15 |  |
CryoEM single particle dataset for psNb 2-45 with spike protein [2062 multi-frame micrographs composed of 40 frames each in TIFF format] | Xiang Y, Huang W, Liu H, Sang Z, Nambulli S, Tubiana J, Williams Jr KL, Duprex WP, Schneidman-Duhovny D, Wilson IA, Taylor DJ, Shi Y [Pubmed: 35738279] [DOI: 10.1016/j.celrep.2022.111004] |
873.7 GB | 2.6 Å |
| 2022-07-18 |  |
CryoEM single particle dataset for psNb 2-10, 2-67 and 2-62 with spike protein [3168 multi-frame micrographs composed of 40 frames each in TIFF format] | Xiang Y, Huang W, Liu H, Sang Z, Nambulli S, Tubiana J, Williams KL, Duprex WP, Schneidman-Duhovny D, Wilson IA, Taylor DJ, Shi Y [Pubmed: 35738279] [DOI: 10.1016/j.celrep.2022.111004] |
1.4 TB | 3.6 Å |
| 2022-09-20 |  |
Cryo-EM structure of Cas13bt3–guide RNA–target RNA complex [2772 multi-frame micrographs composed of 48 frames each in TIFF format] | Nakagawa R, Kannan S, Altae-Tran H, Takeda SN, Tomita A, Hirano H, Kusakizako T, Nishizawa T, Yamashita K, Zhang F, Nishimasu H, Nureki O [Pubmed: 36027912] [DOI: 10.1016/j.molcel.2022.08.001] |
616.9 GB | 3.38 Å |
| 2022-11-29 |  |
Parallel cryo electron tomography (PACE-tomo) of 70S ribosomes (121 tilt series) [multiple data sets in TIFF and MRC formats] | Eisenstein F, Danev R [Pubmed: 36456783] [DOI: 10.1038/s41592-022-01690-1] |
490.1 GB | 3.1 Å |
| 2022-09-20 |  |
Single particle cryo-EM of Saccharomyces cerevisiae virus L-BC [unaligned 30-frame TIFFs+mdocs] [10480 multi-frame micrographs composed of 30 frames each in TIFF format] | Grybchuk D, Procházková M, Füzik T, Konovalovas A, Serva S, Yurchenko V, Plevka P [Pubmed: 35986212] [DOI: 10.1038/s42003-022-03793-z] |
1.1 TB | 2.9 - 16.0 Å |
| 2023-01-30 |  |
Integration of an event-driven Timepix3 hydrid pixel detector into a cryo-EM workflow [multiple data sets in MRCS and TPX3 formats] | van Schayck JP, Zhang Y, Knoops K, Peters PJ, Ravelli RBG [DOI: 10.1093/micmic/ozac009] |
2.7 TB | 3.05 Å |
| 2023-01-18 |  |
Tilt series of cell-cell contact of two PTK-1 cells [35 tilt series in MRC format] | Lemos M, Bezault A, Sauvanet C, Hanein D, Volkmann N [Pubmed: 36539423] [DOI: 10.1038/s41467-022-35409-9] |
1.1 GB | — |
| 2022-10-31 |  |
Cryo-EM dataset of P.berghei kinesin-8B motor domains in no nucleotide state bound to tubulin dimer [multiple data sets in MRC format] | Liu T, Shilliday F, Cook AD, Moores CA [Pubmed: 36384964] [DOI: 10.1038/s41467-022-34710-x] |
890.0 GB | 4.3 Å |
| 2022-11-25 |  |
Cryo-EM dataset of P.berghei kinesin-8B motor domain in AMPPNP state bound to tubulin dimer [1026 micrographs in MRC format] | Liu T, Shilliday F, Cook AD, Moores CA [Pubmed: 36384964] [DOI: 10.1038/s41467-022-34710-x] |
54.4 GB | 3.3 Å |
| 2022-12-13 |  |
Single particle cryo-EM dataset of the Vairimorpha necatrix 20S proteasome from spores [7240 multi-frame micrographs composed of 30 frames each in TIFF format] | Jespersen N, Ehrenbolger K, Winiger RR, Svedberg D, Vossbrinck CR, Barandun J [Pubmed: 36379934] [DOI: 10.1038/s41467-022-34691-x] |
814.1 GB | 2.77 Å |
