Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2023-09-22 |  |
Carboxysome minishell containing CsoS1A4A and CsoS2 [20277 multi-frame micrographs composed of 50 frames each in TIFF format] | Ni T, Jiang Q, Ng PC, Dou H, Liu LN, Zhang P [Pubmed: 37679318] [DOI: 10.1038/s41467-023-41211-y] |
6.9 TB | 1.86 - 2.52 Å |
| 2019-01-18 |  |
Calicivirus VP2 forms a portal to mediate endosome escape [5198 micrographs in MRC format] | Conley MJ, McElwee M, Azmi LB, Gabrielsen M, Byron O, Goodfellow IG, Bhella D [Pubmed: 30626974] [DOI: 10.1038/s41586-018-0852-1] |
324.9 GB | 3.0 Å |
| 2019-01-18 |  |
Calicivirus VP2 forms a portal to mediate endosome escape [13872 micrographs in MRC format] | Conley MJ, McElwee M, Azmi LB, Gabrielsen M, Byron O, Goodfellow IG, Bhella D [Pubmed: 30626974] [DOI: 10.1038/s41586-018-0852-1] |
867.0 GB | 3.75 Å |
| 2022-12-19 |  |
CLEMSite, a software for automated phenotypic screens using light microscopy and FIB-SEM. [multiple data sets in TIFF format] | Lleti JMSL, Steyer AMS, Schwab YS | 19.7 GB | — |
| 2021-05-28 |  |
CLEM/FIB-SEM Imaging of T Cells after the Formation of Signaling Microclusters at the Immunological Synapse [160 micrographs in TIFF format] | Narayan K | 26.6 MB | — |
| 2020-12-21 |  |
CEM500K - A large-scale heterogeneous unlabeled cellular electron microscopy image dataset for deep learning. [496544 micrographs in TIFF format] | Conrad RW, Narayan K [DOI: 10.1101/2020.12.11.421792] |
16.6 GB | — |
| 2022-05-20 |  |
CEM1.5M : a cellular EM dataset containing ~1.5 x 106 unlabeled 2D image patches curated for deep learning [1592753 micrographs in TIFF format] | Narayan K | 57.6 GB | — |
| 2022-05-10 |  |
CEM-MitoLab: a dataset of ~22K cellular EM 2D images with label maps of ~135K mitochondrial instances, for deep learning [43720 micrographs in TIFF format] | Narayan K, Conrad RW | 2.8 GB | — |
| 2020-12-09 |  |
CARD8-CT filament [1208 multi-frame micrographs composed of 50 frames each in TIFF format] | Robert Hollingsworth L, David L, Li Y, Sharif H, Fontana P, Fu TM, Wu H [Pubmed: 33420033] [DOI: 10.1038/s41467-020-20320-y] |
1.2 TB | 3.54 Å |
| 2022-07-12 |  |
C2-symmetric single-particle cryo-EM map of T. vaginalis FDPF3 - unaligned multi-frame micrographs [stack of 7398 particles in TIFF format] | Bell TA [Pubmed: 35780837] [DOI: 10.1016/j.jbc.2022.102210] |
1.4 TB | 6.6 - 6.8 Å |
| 2023-01-03 |  |
C-terminal half of Leucine Rich Repeat Kinase 1 (LRRK1) [3629 multi-frame micrographs composed of 50 frames each in TIFF format] | Matyszewski M, Leschziner AE [Pubmed: 36510024] [DOI: 10.1038/s41594-022-00863-y] |
1.2 TB | 5.8 Å |
| 2023-01-03 |  |
C-terminal half of LRRK2 (I2020T) bound to microtubule in presence of MLi-2 kinase inhibitor [2354 multi-frame micrographs composed of 55 frames each in TIFF format] | Matyszewski M, Leschziner AE [Pubmed: 36510024] [DOI: 10.1038/s41594-022-00863-y] |
684.8 GB | 4.5 - 18.0 Å |
| 2020-04-03 |  |
BurrH bound to DNA Origami Goniometer [multiple data sets in MRC and MRCS formats] | Aksel T, Yu Z, Cheng Y, Douglas SM [Pubmed: 33077960] [DOI: 10.1038/s41587-020-0716-8] |
1.3 TB | 6.5 Å |
| 2023-02-28 |  |
Beta-galactosidase on EG-grid [3500 multi-frame micrographs composed of 40 frames each in TIFF format] | Fujita J, Makino F, Asahara H, Moriguchi M, Kumano S, Anzai I, Kishikawa J, Matsuura Y, Kato T, Namba K, Inoue T [Pubmed: 36755111] [DOI: 10.1038/s41598-023-29396-0] |
369.6 GB | 1.81 Å |
| 2021-03-12 |  |
Beta-galactosidase in complex with deoxygalacto-nojirimycin [598 multi-frame micrographs composed of 75 frames each in TIFF format] | Saur M, Hartshorn MJ, Dong J, Reeks J, Bunkoczi G, Jhoti H, Williams PA [Pubmed: 31877353] [DOI: 10.1016/j.drudis.2019.12.006] |
765.8 GB | 2.3 Å |
| 2021-03-12 |  |
Beta-galactosidase in complex with PETG [562 multi-frame micrographs composed of 75 frames each in TIFF format] | Saur M, Hartshorn MJ, Dong J, Reeks J, Bunkoczi G, Jhoti H, Williams PA [Pubmed: 31877353] [DOI: 10.1016/j.drudis.2019.12.006] |
720.1 GB | 2.2 Å |
| 2021-03-12 |  |
Beta-galactosidase in complex with L-ribose [517 multi-frame micrographs composed of 75 frames each in TIFF format] | Saur M, Hartshorn MJ, Dong J, Reeks J, Bunkoczi G, Jhoti H, Williams PA [Pubmed: 31877353] [DOI: 10.1016/j.drudis.2019.12.006] |
669.1 GB | 2.3 Å |
| 2014-11-19 |  |
Beta-galactosidase Falcon-II micrographs plus manually selected coordinates by Richard Henderson [84 micrographs in MRC format] | Scheres SH [Pubmed: 25486611] [DOI: 10.1016/j.jsb.2014.11.010] |
5.3 GB | 4.2 Å |
| 2018-12-13 |  |
Beta-2-microglobulin fibrils with multiple polymorphs formed at pH 2 [5549 micrographs in MRC format] | Iadanza MG [Pubmed: 30375379] [DOI: 10.1038/s41467-018-06761-6] |
294.3 GB | 3.975 Å |
| 2018-05-04 |  |
Benchmarking cryo-EM single particle analysis workflow [699 multi-frame micrographs composed of 33 frames each in MRC format] | Kim LK, Rice WJ, Eng ET, Kopylov M, Cheng A, Raczkowski AR, Jordan KD, Bobe D, Potter CS, Carragher B [Pubmed: 29951483] [DOI: 10.3389/fmolb.2018.00050] |
37.3 GB | 2.5 - 2.8 Å |
| 2018-05-11 |  |
Benchmarking cryo-EM single particle analysis workflow [1626 multi-frame micrographs composed of 30 frames each in MRC format] | Kim LK, Rice WJ, Eng ET, Kopylov M, Cheng A, Raczkowski AM, Jordan KJ, Bobe D, Potter CS, Carragher B [Pubmed: 29951483] [DOI: 10.3389/fmolb.2018.00050] |
345.0 GB | 3.0 - 4.6 Å |
| 2018-06-13 |  |
Benchmarking cryo-EM single particle analysis workflow [1614 multi-frame micrographs composed of 30 frames each in MRC format] | Kim LY, Rice WJ, Eng ET, Kopylov M, Cheng A, Raczkowski AM, Jordan KD, Bobe D, Potter CS, Carragher B [Pubmed: 29951483] [DOI: 10.3389/fmolb.2018.00050] |
85.6 GB | 2.4 - 2.8 Å |
| 2023-09-05 |  |
Benchmark SBF SEM data of HeLa cells previously imaged by Zeiss LSM900 Airyscan microscopy [multiple data sets in DM4 and TIFF formats] | Domart MC, Collinson LM [DOI: 10.1101/2023.05.11.540445] |
39.2 GB | — |
| 2021-10-29 |  |
Benchmark FIB SEM data of HeLa cells previously imaged by Zeiss LSM900 Airyscan microscopy [multiple data sets in TIFF format] | Peddie CJ, Domart MC, Collinson L | 1.7 TB | — |
| 2023-05-22 |  |
Benchmark FIB SEM data (#2) of HeLa cells previously imaged by Zeiss LSM900 Airyscan microscopy [multiple data sets in TIFF format] | Peddie CJ, Domart MC, Collinson LM [DOI: 10.1101/2023.05.11.540445] |
511.9 GB | — |
