Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2018-01-22 |  |
Cryo-EM structure of the TMEM16A in Nanodisc [stack of 3149 particles in MRCS format] | Dang S, Cheng Y [Pubmed: 29236684] [DOI: 10.1038/nature25024] |
226.7 GB | 3.8 Å |
| 2018-01-22 |  |
Cryo-EM structure of the TMEM16A in LMNG [multiple data sets in MRCS format] | Dang S, Cheng Y [Pubmed: 29236684] [DOI: 10.1038/nature25024] |
244.2 GB | 3.8 Å |
| 2021-04-14 |  |
Krios G4 apoferritin test with K3/BioQuantum SerialEM BIS 3x3x4 [2484 multi-frame micrographs composed of 76 frames each in TIFF format] | Danev R, Yanagisawa H, Kikkawa M [Pubmed: 33969878] [DOI: 10.1093/jmicro/dfab016] |
688.8 GB | 1.35 Å |
| 2018-10-25 |  |
Cryo-EM structure of mouse heavy-chain apoferritin at 1.62 A [1647 multi-frame micrographs composed of 59 frames each in MRC format] | Danev R, Yanagisawa H, Kikkawa M [Pubmed: 31078399] [DOI: 10.1016/j.tibs.2019.04.008] |
1.2 TB | 1.62 Å |
| 2016-11-10 |  |
Volta phase plate with defocus cryo-EM dataset of Thermoplasma acidophilum 20S proteasome [427 multi-frame micrographs composed of 24 frames each in TIFF format] | Danev R, Tegunov D, Baumeister W [Pubmed: 28109158] [DOI: 10.1101/085530] |
92.5 GB | 2.2 - 2.4 Å |
| 2016-03-16 |  |
Volta phase plate in-focus dataset of T20S proteasome [158 multi-frame micrographs composed of 12 frames each in MRC format] | Danev R, Baumeister W [Pubmed: 26949259] [DOI: 10.7554/eLife.13046] |
50.3 GB | 3.2 Å |
| 2016-03-16 |  |
Cryo-EM dataset of T20S proteasome [293 multi-frame micrographs composed of 12 frames each in MRC format] | Danev R, Baumeister W [Pubmed: 26949259] [DOI: 10.7554/eLife.13046] |
93.3 GB | 3.1 Å |
| 2020-11-24 |  |
Krios G4 apoferritin test with K3/BioQuantum SerialEM BIS 3x3x1 [2391 multi-frame micrographs composed of 76 frames each in TIFF format] | Danev R [Pubmed: 33969878] [DOI: 10.1093/jmicro/dfab016] |
659.0 GB | 1.31 Å |
| 2020-12-11 |  |
Krios G4 apoferritin test with Falcon 4 (no filter) EPU 1x1x4 [3540 multi-frame micrographs composed of 720 frames each in EER format] | Danev R [Pubmed: 33969878] [DOI: 10.1093/jmicro/dfab016] |
879.2 GB | 1.43 Å |
| 2020-12-02 |  |
Krios G4 apoferritin test with K3/BioQuantum SerialEM BIS 1x1x4 [3472 multi-frame micrographs composed of 76 frames each in TIFF format] | Danev R [Pubmed: 33969878] [DOI: 10.1093/jmicro/dfab016] |
966.0 GB | 1.35 Å |
| 2020-12-07 |  |
Krios G4 apoferritin test with K3/(slit out) SerialEM BIS 1x1x4 [4184 multi-frame micrographs composed of 76 frames each in TIFF format] | Danev R [Pubmed: 33969878] [DOI: 10.1093/jmicro/dfab016] |
1.2 TB | 1.43 Å |
| 2021-10-26 |  |
The CryoEM Structure of Drosophila Flight Muscle Thick Filaments at 7Å Resolution [1510 multi-frame micrographs composed of 44 frames each in MRC format] | Daneshparvar N, Taylor DW, O'Leary TS, Rahmani H, Abbasiyeganeh F, Previs MJ, Taylor KA [Pubmed: 32718994] [DOI: 10.1101/2020.06.05.136580] |
8.7 TB | 7.0 - 8.0 Å |
| 2017-12-18 |  |
CryoET of apoferritin single particle [multiple data sets in MRC format] | Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan YZ, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice MJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B [Pubmed: 29809143] [DOI: 10.7554/eLife.34257] |
29.2 GB | — |
| 2017-12-18 |  |
CryoET of T20S proteasome single particle [multiple data sets in MRC format] | Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan YZ, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice MJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B [Pubmed: 29809143] [DOI: 10.7554/eLife.34257] |
12.4 GB | — |
| 2023-02-22 |  |
Light and electron microscopy continuum-resolution imaging of 3D cell cultures [19 multi-frame micrographs composed of 1 frames each in MRC format] | DImprima EDI, Garcia Montero MGM, Gawrzak, SG, Ronchi PR, Zagoriy IZ, Schwab YS, Jechlinger JS, Mahamid JM | 72.9 GB | — |
| 2024-03-16 |  |
Single Particle Cryo Electron Microscopy Structure of the Dsl1 Complex bound to the SNAREs Sec20 and Use1 [multiple data sets in MRC format] | DAmico KD [Pubmed: 38196032] [DOI: 10.1038/s41594-023-01164-8] |
1.4 TB | 4.5 Å |
| 2023-10-06 |  |
Extracellular filaments of Pyrobaculum calidifontis [18019 multi-frame micrographs composed of 40 frames each in TIFF format] | Cvirkaite-Krupovic V, Egelman EH, Krupovic M, Wang F [Pubmed: 35727984] [DOI: 10.1073/pnas.2207037119] |
3.7 TB | 3.8 - 4.1 Å |
| 2024-05-14 |  |
Cryo-EM structure of CAK in complex with nucleotide analogue ATPgS [5781 multi-frame micrographs composed of 981 frames each in EER format] | Cushing VI, Koh AF, Feng J, Ali S, Kotecha A, Greber BJ [Pubmed: 38480681] [DOI: 10.1038/s41467-024-46375-9] |
2.3 TB | 1.9 Å |
| 2024-05-16 |  |
Cryo-EM structure of apo-CAK [5805 multi-frame micrographs composed of 981 frames each in EER format] | Cushing VI, Koh AF, Feng J, Ali S, Kotecha A, Greber BJ [Pubmed: 38480681] [DOI: 10.1038/s41467-024-46375-9] |
2.3 TB | 2.3 Å |
| 2021-04-14 |  |
In situ cryo-electron tomogram of a pyrenoid inside a Chlamydomonas reinhardtii cell (tilt series) [1 tilt series in MRC format] | Cuellar LK, Schaffer M, Martinez-Sanchez A, Plitzko JM, Foerster F, Engel BD [Pubmed: 28938114] [DOI: 10.1016/j.cell.2017.08.008] |
5.8 GB | — |
| 2021-11-30 |  |
Entropy Regularized Deconvolution of Cellular Cryo-Transmission Electron Tomograms [3 tilt series in MRC format] | Croxford MW, Elbaum ME, Arigovindan M, Kam Z, Agard DA, Villa E, Sedat J [Pubmed: 34876518] [DOI: 10.1073/pnas.2108738118] |
6.4 GB | — |
| 2021-11-30 |  |
Entropy Regularized Deconvolution of Cellular Cryo-Transmission Electron Tomograms [2 tilt series in MRC format] | Croxford MW, Elbaum ME, Arigovindan M, Kam Z, Agard DA, Villa E, Sedat J [Pubmed: 34876518] [DOI: 10.1073/pnas.2108738118] |
5.2 GB | — |
| 2021-02-05 |  |
Affinity-purified RqcH-ribosome-associated quality control complexes from Bacillus subtilis [7178 multi-frame micrographs composed of 20 frames each in TIFF format] | Crowe-McAuliffe CT, Takada H, Murina V, Atkinson GC, Wilson DN, Hauryliuk V [Pubmed: 33259810] [DOI: 10.1016/j.molcel.2020.11.002] |
514.6 GB | 2.6 - 3.5 Å |
| 2021-02-05 |  |
Affinity-purified RqcP/YabO-ribosome-associated quality control complexes from Bacillus subtilis [5416 multi-frame micrographs composed of 20 frames each in TIFF format] | Crowe-McAuliffe CT, Takada H, Murina V, Atkinson GC, Wilson DN, Hauryliuk V [Pubmed: 33259810] [DOI: 10.1016/j.molcel.2020.11.002] |
358.1 GB | 2.6 - 4.9 Å |
| 2022-02-24 |  |
Affinity-purified PoxtA in complex with 70S ribosomes from Enterococcus faecalis [3640 multi-frame micrographs composed of 40 frames each in TIFF format] | Crowe-McAuliffe CT, Murina V, Hauryliuk V, Wilson DN [Pubmed: 35387982] [DOI: 10.1038/s41467-022-29274-9] |
321.8 GB | 2.4 Å |
