Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2022-07-18 |  |
Structure of SARS-CoV-2 M protein in lipid nanodiscs [7588 multi-frame micrographs composed of 1251 frames each in EER format] | Dolan KA, Dutta M, Kern DM, Kotecha A, Voth GA, Brohawn SG [Pubmed: 36264056] [DOI: 10.7554/eLife.81702] |
4.0 TB | 3.52 Å |
| 2022-10-04 |  |
Particle stack from TRPM8 bound to calcium dataset [multiple data sets in MRC format] | Diver MM, Cheng Y, Julius D [Pubmed: 31488702] [DOI: 10.1126/science.aax6672] |
129.7 GB | 3.2 Å |
| 2021-11-08 |  |
Single-particle cryo-EM of the full-length merozoite surface protein 1 from Plasmodium falciparum [multiple data sets in MRC and MRCS formats] | Dijkman PM, Marzluf T, Zhang Y, Chang SYS, Helm D, Lanzer M, Bujard H, Kudryashev M [Pubmed: 34078606] [DOI: 10.1126/sciadv.abg0465] |
4.3 TB | 3.1 - 3.6 Å |
| 2022-07-12 |  |
In situ cryo-electron tomography of T. kivui cells [multiple data sets in MRC and TIFF formats] | Dietrich HM, Righetto RD, Kumar A, Wietrzynski W, Trischler R, Schuller SK, Wagner J, Schwarz FM, Engel BD, Müller V, Schuller JM [Pubmed: 35859174] [DOI: 10.1038/s41586-022-04971-z] |
373.4 GB | 17.0 Å |
| 2014-06-19 |  |
Cryo-electron tomography average of an C1-IgG complex [27 class averages in MRC format] | Diebolder CA, Beurskens FJ, de Jong RN, Koning RI, Strumane K, Lindorfer MA, Voorhorst M, Ugurlar D, Rosati S, Heck AJR, van de Winkel JGJ, Wilson IA, Koster AJ, Taylor RP, Ollmann-Saphire E, Burton DR, Schuurman J, Gros P, Parren PWHI [Pubmed: 24626930] [DOI: 10.1126/science.1248943] |
10.8 GB | 66.0 Å |
| 2022-09-20 |  |
Cryo-EM dataset of Candida albicans CIII, inhibitor free [3634 micrographs in MRC format] | Di Trani J, Rubinstein JL [Pubmed: 34525326] [DOI: 10.1016/j.str.2021.08.006] |
227.1 GB | 3.0 Å |
| 2021-10-22 |  |
Single particle cryo-EM of human mitochondrial ribosomes from Pde12 KO cells [46109 multi-frame micrographs composed of 39 frames each in TIFF format] | Desai N, Yang H, Chandrasekaran V, Kazi R, Minczuk M, Ramakrishnan V [Pubmed: 33243891] [DOI: 10.1126/science.abc7782] |
45.7 TB | 4.4 Å |
| 2017-06-01 |  |
The Structure of the Yeast Mitochondrial Ribosome [stack of 2524 particles in MRCS format] | Desai N, Brown A, Amunts A, Ramakrishnan V [Pubmed: 28154081] [DOI: 10.1126/science.aal2415] |
138.6 GB | 3.2 - 4.97 Å |
| 2015-06-18 |  |
A simulated cryoEM data set of GroEL particles [stack of 10000 particles in MRC format] | Deng Y, Sun F | 1.5 GB | — |
| 2020-08-18 |  |
Cryo-EM structure of Human NatB with an Alpha-Synuclein peptide and CoA conjugate [5281 multi-frame micrographs composed of 35 frames each in TIFF format] | Deng S, Pan B, Gottlieb L, Petersson EJ, Marmorstein R [Pubmed: 32885784] [DOI: 10.7554/eLife.57491] |
2.0 TB | 3.46 Å |
| 2024-04-22 |  |
Cryo-EM structure of the complete inner kinetochore of the budding yeast point centromere [multiple data sets in EER and MRC formats] | Dendooven T, Zhang Z, Yang J, McLaughlin S, Schwabb J, Scheres S, Yatskevich S, Barford D [Pubmed: 37506202] [DOI: 10.1126/sciadv.adg7480] |
3.5 TB | 3.7 Å |
| 2020-07-30 |  |
Cryo-EM structures of calcium homeostasis modulator (CALHM) channels [multiple data sets in TIFF format] | Demura K, Kusakizako T, Shihoya W, Hiraizumi M, Shimada H, Yamashita K, Nishizawa T, Nureki O [Pubmed: 32832629] [DOI: 10.1126/sciadv.aba8105] |
6.8 TB | 2.66 - 3.6 Å |
| 2021-11-16 |  |
Subcellular architecture collodaria photosymbiosis [7 multi-frame micrographs composed of 1000 frames each in TIFF format] | Decelle JD [Pubmed: 34499794] [DOI: 10.1111/1462-2920.15766] |
10.3 GB | — |
| 2022-07-22 |  |
Structure of the human RAD17-RFC clamp loader and 9-1-1 checkpoint clamp bound to a dsDNA-ssDNA junction [8271 multi-frame micrographs composed of 882 frames each in EER format] | Day M, Oliver AW, Pearl LH [Pubmed: 35819203] [DOI: 10.1093/nar/gkac588] |
4.4 TB | 3.59 Å |
| 2023-10-13 |  |
SBF-SEM micrographs of A. algerae microsporidia spores, 5 min germination [1215 micrographs in TIFF format] | Davydov A, Jaroenlak P, Ekiert D, Bhabha G [DOI: 10.7554/eLife.86638.1] |
226.3 GB | — |
| 2023-10-13 |  |
SBF-SEM micrographs of A. algerae microsporidia spores, 45 min germination [300 micrographs in TIFF format] | Davydov A, Jaroenlak P, Ekiert D, Bhabha G [DOI: 10.7554/eLife.86638.1] |
55.9 GB | — |
| 2016-12-02 |  |
CryoEM Dataset of L17-Depleted 50S Ribosomal Intermediates [stack of 131899 particles in MRC format] | Davis JH, Tan YZ, Carragher B, Potter CS, Lyumkis D, Williamson JR [Pubmed: 27912064] [DOI: 10.1016/j.cell.2016.11.020] |
50.3 GB | 3.7 - 7.9 Å |
| 2020-07-30 |  |
Cryo electron microscopy of RyR1 in the presence and abscence of Ca, Caffeine and ATP ligands [stack of 791956 particles in SPIDER format] | Dashti A [Pubmed: 32948759] [DOI: 10.1038/s41467-020-18403-x] |
334.2 GB | 4.5 Å |
| 2023-10-17 |  |
Soft X-ray Cryo Tomography of Trypanosoma [180 reconstructed volumes in MRC format] | Darrow MC [Pubmed: 28246039] [DOI: 10.1016/j.jsb.2017.02.007] |
1.5 GB | — |
| 2019-05-02 |  |
Cryo-EM structure of TRPV5 W583A in nanodisc [stack of 385896 particles in MRCS format] | Dang S, van Goor MK, Asarnow D, Wang Y, Julius D, Cheng Y, van der Wijst J [Pubmed: 30975749] [DOI: 10.1073/pnas.1820323116] |
94.4 GB | 2.8 Å |
| 2019-05-09 |  |
Cryo-EM structure of TRPV5 full length in nanodisc [stack of 930 particles in MRCS format] | Dang S, van Goor MK, Asarnow D, Wang Y, Julius D, Cheng Y, van der Wijst J [Pubmed: 30975749] [DOI: 10.1073/pnas.1820323116] |
100.1 GB | 3.0 Å |
| 2019-05-08 |  |
Cryo-EM structure of TRPV5 1-660 in nanodisc [stack of 2968 particles in MRCS format] | Dang S, van Goor MK, Asarnow D, Wang Y, Julius D, Cheng Y, van der Wijst J [Pubmed: 30975749] [DOI: 10.1073/pnas.1820323116] |
224.3 GB | 2.9 Å |
| 2019-05-09 |  |
Cryo-EM structure of TRPV5 with calmodulin bound [stack of 1135 particles in MRCS format] | Dang S, van Goor MK, Asarnow D, Wang Y, Julius D, Cheng Y, van der Wijst J [Pubmed: 30975749] [DOI: 10.1073/pnas.1820323116] |
118.1 GB | 3.3 Å |
| 2018-01-22 |  |
Cryo-EM structure of the TMEM16A in Nanodisc [stack of 3149 particles in MRCS format] | Dang S, Cheng Y [Pubmed: 29236684] [DOI: 10.1038/nature25024] |
226.7 GB | 3.8 Å |
| 2018-01-22 |  |
Cryo-EM structure of the TMEM16A in LMNG [multiple data sets in MRCS format] | Dang S, Cheng Y [Pubmed: 29236684] [DOI: 10.1038/nature25024] |
244.2 GB | 3.8 Å |
