EMPIAR-10484
Soft X-ray Cryo Tomography of Trypanosoma [180 reconstructed volumes in MRC format]
Publication:

SuRVoS: Super-Region Volume Segmentation workbench

Luengo I, Darrow MC, Spink MC, Sun Y, Dai W, He CY, Chiu W, Pridmore T, Ashton AW, Duke EMH, Basham M, French AP

Journal of structural biology 198 (2017) 43-53

PMID: 28246039

Related EMDB entry:
Deposited:
2019-11-19
Released:
2023-10-17
Last modified:
2023-10-17
Imageset size:
1.52 GB
Imageset DOI:
Experimental metadata:
Download xml json
Contains:
  • reconstructed volumes
1. Trypanosoma
Category:
reconstructed volumes
Image format:
MRC
No. of images or tilt series:
180
Image size:
(None, None)
Pixel type:
UNSIGNED BYTE
Pixel spacing:
(None, None)
Details:
The data.h5 file is the data output from SuRVoS.
It is in the same orientation as the annotations.

The Easy_Level*_Label*.rec files are the annotation output from SuRVoS.
Each file is a different class of objects as arbitrarily defined by the annotator.
They are all in the same orientations as the data.h5 file.

The .mpg file is the movie showing these data that was provided for publication.
It was created in Chimera.
The movie is open access, but if made avaialble anywhere should indicate the publication it came from:
Luengo, I., Darrow, M. C., Spink, M. C., Sun, Y., Dai, W., He, C. Y., et al.
SuRVoS: Super-Region Volume Segmentation Workbench.
J Struct Biol (198), doi: 10.1016/j.jsb.2017.02.007 (2017).
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