Due to a storage failure, some data files are currently inaccessible (Markted: Incomplete dataset).
We are currently working to restore, but we are accepting priority requests.(email, inquiry).
We are restoring lost files from backups in the following order:
We apologize for the inconvenience and appreciate your understanding.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2021-08-06 | Cryo-EM structures of engineered active bc1-cbb3 type CIII2CIV super-complexes and electronic communication between the complexes [multiple data sets in MRCS, TIFF and MRC formats] | Steimle S, VanEeuwen T, Ozturk Y, Kim HJ, Braitbard M, Selamoglu N, Garcia BA, Schneidman-Duhovny D, Murakami K, Daldal F [Pubmed: 33568648] [DOI: 10.1038/s41467-021-21051-4] |
12.4 TB | 3.3 - 7.2 Å | |
| 2025-07-08 | Raw cryo-EM micrographs from the publication "Structure and Function of Stator Units of the Bacterial Flagellar Motor" [47590 multi-frame micrographs composed of 40 frames each in MRC format] | Santiveri M, Roa-Eguiara A, Kühne C, Wadhwa N, Hu H, Berg HC, Erhardt M, Taylor NMI [Pubmed: 32931735] [DOI: 10.1016/j.cell.2020.08.016] |
12.3 TB | 2.98 - 3.1 Å | |
| 2025-12-23 | Single-particle cryo-EM data of Apo ReChb [27453 multi-frame micrographs composed of 50 frames each in TIFF format] | Tascon I, Lopez-Alonso JP, Ubarretxena-Belandia I [Pubmed: 39482449] [DOI: 10.1038/s41587-024-02461-3] |
12.3 TB | 3.33 Å | |
| 2024-05-20 | Cryo-EM of the human CAK: Data for 1.73 Å-resolution reconstruction [multiple data sets in EER format] | Cushing VI, Koh AF, Feng J, Jurgaityte K, Bondke A, Kroll SHB, Barbazanges M, Scheiper B, Bahl AK, Barrett AGM, Ali S, Kotecha A, Greber BJ [Pubmed: 38480681] [DOI: 10.1038/s41467-024-46375-9] |
12.1 TB | 1.7 Å | |
| 2023-09-11 | Cryo-EM micrographs of HIV-1 Vif bound to human APOBEC3H, CBF-beta, ELOB, ELOC, CUL5, and RBX2 [12546 multi-frame micrographs composed of 2130 frames each in TIFF format] | Ito F, Alvarez-Cabrera AL, Kim K, Zhou ZH, Chen XS [Pubmed: 37640699] [DOI: 10.1038/s41467-023-40955-x] |
11.9 TB | 5.14 Å | |
| 2025-10-08 | Engineered peptide-specific binder in complex with HLA-DR1/CLIP [21332 multi-frame micrographs composed of 1 frames each in EER format] | Jude KM, Yang X, Du H, Kassardjian A, Julien JP, Huang PS, Garcia KC [Pubmed: 39672953] [DOI: 10.1038/s41587-024-02466-y] |
11.9 TB | 2.28 Å | |
| 2022-11-18 | Cryo-EM reconstruction of TNKS2 SAM-PARP filament [multiple data sets in MRCS, MRC and TIFF formats] | Mariotti L, Inian O, Desfosses A, Beuron F, Morris E.P, Guettler S [Pubmed: 36418402] [DOI: 10.1038/s41586-022-05449-8] |
11.8 TB | 2.98 Å | |
| 2018-06-20 | An atomic structure of human gamma-secretase [2925 multi-frame micrographs composed of 20 frames each in MRCS format] | Bai XC, Yan C, Yang G, Lu P, Ma D, Sun L, Zhou R, Scheres SHW, Shi Y [Pubmed: 26280335] [DOI: 10.1038/NATURE14892] |
11.7 TB | 3.4 Å | |
| 2024-11-04 | CryoEM structure of a post-assembly MS-ring reveals plasticity in stoichiometry and conformation [11627 multi-frame micrographs composed of 50 frames each in MRC format] | Singh PK, Iverson TM [Pubmed: 37205674] [DOI: 10.1371/journal.pone.0285343] |
11.7 TB | 2.9 - 4.1 Å | |
| 2025-08-22 | Structure of the central Staphylococcus aureus AAA+ protease MecA/ClpC/ClpP [multiple data sets in TIFF format] | Azinas S, Wallden K, Katikaridis P, Jenne T, Schahl A, Mogk A, Carroni M [DOI: 10.1101/2025.06.06.658286] |
11.7 TB | 3.0 - 3.5 Å | |
| 2026-01-11 | Electron cryomicroscopy of NSF, the binary SNARE complex of SNAP-25 and syntaxin-1a, and alpha-SNAP under hydrolyzing conditions [multiple data sets in TIFF and MRC formats] | White KI, Brunger AT [Pubmed: 40993127] [DOI: 10.1038/s41467-025-62764-0] |
11.5 TB | 3.29 - 4.5 Å | |
| 2025-09-02 | Intermediate states of ATAD5-RFC incubated with PCNA for 20min [18426 multi-frame micrographs composed of 50 frames each in TIFF format] | Wang FW [Pubmed: 38871854] [DOI: 10.1038/s41594-024-01332-4] |
11.5 TB | 3.04 Å | |
| 2023-06-30 | CryoEM micrographs of the leptin–leptin receptor complex [multiple data sets in TIFF and MRC formats] | Saxton RA, Caveney NA, Garcia KC [Pubmed: 37002197] [DOI: 10.1038/s41467-023-37169-6] |
11.4 TB | 3.8 - 5.9 Å | |
| 2023-01-31 | Cryo-EM micrographs of APOBEC3G bound to HIV-1 Vif in comblex with CBF-beta and CUL5 E3 ligase [11803 multi-frame micrographs composed of 2051 frames each in EER format] | Ito F, Alvarez-Cabrera AL, Liu S, Yang H, Shiriaeva A, Zhou ZH, Chen XS [Pubmed: 36598981] [DOI: 10.1126/sciadv.ade3168] |
11.4 TB | 3.57 - 5.4 Å | |
| 2024-04-03 | Structure of the Plasmodium falciparum 20S proteasome beta-6 A117D mutant complexed with inhibitor WLW-vs [24086 multi-frame micrographs composed of 65 frames each in TIFF format] | Hsu HC, Li H [Pubmed: 38097652] [DOI: 10.1038/s41467-023-44077-2] |
11.3 TB | 2.58 Å | |
| 2025-10-13 | Cryo electron [21252 multi-frame micrographs composed of 60 frames each in EER format] | Ramírez-Larrota JS, Juyoux P, Guerra P, Eckhard U, Gomis-Rüth FX [Pubmed: 40627637] [DOI: 10.1371/journal.ppat.1013292] |
11.3 TB | 2.81 Å | |
| 2025-02-03 | Transporter associated with antigen processing (TAP) bound to the 9-mer peptide ILKEPVHGV [34508 multi-frame micrographs composed of 30 frames each in TIFF format] | Lee J, Oldham ML, Manon V, Chen J [Pubmed: 38805290] [DOI: 10.1073/pnas.2320879121] |
11.3 TB | 3.5 Å | |
| 2025-01-21 | Type six secretion system exported effector 5 (Tse5) [10244 multi-frame micrographs composed of 50 frames each in EER format] | Gonzalez-Magana A, Tascon I, Altuna-Alvarez J, Velazquez C, Zabala M, Ubarretxena-Belandia I, Albesa-Jove D [Pubmed: 38016939] [DOI: 10.1038/s41467-023-43585-5] |
11.3 TB | 2.45 Å | |
| 2021-07-30 | Structure of human telomerase holoenzyme with bound telomeric DNA [43639 multi-frame micrographs composed of 48 frames each in TIFF format] | Ghanim GE, Fountain AJ, van Roon AM, Rangan R, Das R, Collins K, Nguyen THD [Pubmed: 33883742] [DOI: 10.1038/s41586-021-03415-4] |
11.2 TB | 3.4 - 6.6 Å | |
| 2025-07-16 | Single particle cryo-EM dataset of sarkosyl-insoluble fraction from tg-SwDI mouse mouse brain tissue containing amyloid-beta fibrils [25662 multi-frame micrographs composed of 700 frames each in EER format] | Zielinski M, Peralta Reyes FS, Gremer L, Schemmert S, Frieg B, Schäfer LU, Willuweit A, Donner L, Elvers M, Nilsson LNG, Syvänen S, Sehlin D, Ingelsson M, Willbold D, Schröder GF [Pubmed: 37973869] [DOI: 10.1038/s41593-023-01484-4] |
11.2 TB | 3.3 - 4.2 Å | |
| 2026-06-28 | Cryo-EM Structures of Methylation-dependent Cas9 [multiple data sets in MRC format] | Shu Y, Zhao Y, Li H [Pubmed: 41986708] [DOI: 10.1038/s41586-026-10384-z] |
11.1 TB | 2.2 - 2.88 Å | |
| 2025-06-26 | Cryo-EM SPA dataset of stably reduced Streptococcus pneumoniae NADPH oxidase with NADH [28120 multi-frame micrographs composed of 938 frames each in EER format] | Dubach VRA, San Segundo-Acosta P, Murphy BJ [Pubmed: 39039317] [DOI: 10.1038/s41594-024-01348-w] |
11.1 TB | 2.36 Å | |
| 2025-05-14 | Single-particle cryo-EM of Staphylococcus aureus ribosomes inhibited by fusidic acid and fusidic acid cyclopentane [multiple data sets in EER, TIFF and MRC formats] | González-López A, Larsson DSD, Selmer M [Pubmed: 38902339] [DOI: 10.1038/s41598-024-64868-x] |
11.1 TB | 2.02 - 2.49 Å | |
| 2019-08-30 | Cryo-EM structures of human P4-ATPase flippase [multiple data sets in TIFF format] | Hiraizumi M, Yamashita K, Nishizawa T, Nureki O [Pubmed: 31416931] [DOI: 10.1126/science.aay3353] |
11.0 TB | 2.63 - 3.42 Å | |
| 2025-07-10 | Cryo-EM of HCoV-229E 5' proximal stem-loop 5 [multiple data sets in TIFF and MRC formats] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38076883] [DOI: 10.1101/2023.11.22.567964] |
10.9 TB | 6.5 Å |