Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2022-01-12 |  |
Raw movies and final particle stack for a dataset of bL17-limited E. coli ribosome assembly intermediates. [multiple data sets in MRCS and MRC formats] | Rabuck-Gibbons JN, Lyumkis D, Williamson JR [Pubmed: 34990602] [DOI: 10.1016/j.str.2021.12.005] EMD-24491 EMD-24492 EMD-24499 EMD-24508 EMD-24509 EMD-24510 EMD-24515 EMD-24517 EMD-24543 EMD-24520 EMD-24521 EMD-24527 EMD-24538 EMD-24539 EMD-24546 EMD-24550 EMD-24555 EMD-24558 EMD-24559 EMD-24561 EMD-24562 EMD-24563 EMD-24564 EMD-24565 EMD-24567 EMD-24568 EMD-24571 EMD-24573 EMD-24574 EMD-24626 EMD-24627 EMD-24631 EMD-24633 EMD-24634 EMD-24658 EMD-24659 EMD-24660 EMD-24661 EMD-24662 EMD-24669 EMD-24671 EMD-24673 |
1.3 TB | 4.5 - 13.6 Å |
| 2023-01-16 |  |
Structure of RecT protein from Listeria innoccua phage A118 in complex with 83-mer single stranded DNA [1619 multi-frame micrographs composed of 45 frames each in TIFF format] | Bell CE [Pubmed: 36543802] [DOI: 10.1038/s41467-022-35572-z] |
822.3 GB | 4.5 Å |
| 2017-08-23 |  |
Conformational Landscape of the p28-Bound Human Proteasome Regulatory Particle [stack of 117471 particles in MRCS format] | Lu Y, Wu J, Dong Y, Chen S, Sun S, Ma YB, Ouyang Q, Finley D, Kirschner MW, Mao Y [Pubmed: 28689658] [DOI: 10.1016/j.molcel.2017.06.007] |
70.0 GB | 4.5 - 8.9 Å |
| 2022-08-12 |  |
Cryo electron tomography of H. neapolitanus alpha-carboxysomes [multiple data sets in MRC format] | Metskas LA, Ortega D, Oltrogge LM, Blikstad C, Laughlin T, Savage DF, Jensen GJ [Pubmed: 35982043] [DOI: 10.1038/s41467-022-32584-7] |
483.4 GB | 4.5 Å |
| 2021-04-23 |  |
Cryo-electron tomography of HIV-1 GagdeltaMASP1T8I assemblies [5 tilt series in MRC format] | Ni T, Frosio T, Mendonça L, Sheng Y, Clare D, Himes BA, Zhang P [Pubmed: 35022621] [DOI: 10.1038/s41596-021-00648-5] |
25.6 GB | 4.5 Å |
| 2023-01-03 |  |
C-terminal half of LRRK2 (I2020T) bound to microtubule in presence of MLi-2 kinase inhibitor [2354 multi-frame micrographs composed of 55 frames each in TIFF format] | Matyszewski M, Leschziner AE [Pubmed: 36510024] [DOI: 10.1038/s41594-022-00863-y] |
684.8 GB | 4.5 - 18.0 Å |
| 2018-04-03 |  |
Conformational Dynamics of human Bact spliceosome [multiple data sets in MRC format] | Haselbach D, Stark H [Pubmed: 29361316] [DOI: 10.1016/j.cell.2018.01.010] |
2.8 TB | 4.5 - 16.0 Å |
| 2024-04-17 |  |
Data set of tilted cryo-EM images of human N-deacetylase/N-sulfotransferase 1 [multiple data sets in TIFF format] | Vallet SD, Annaval T, Wild R, Lortat-Jacob H [DOI: 10.1002/pgr2.8] |
1.9 TB | 4.5 Å |
| 2023-11-06 |  |
Micrographs of ER-derived vesicles from HEK293F cells [893 multi-frame micrographs composed of 8 frames each in TIFF format] | Gemmer M, Chaillet ML, van Loenhout J, Cuevas Arenas R, Vismpas D, Gröllers-Mulderij M, Koh FA, Albanese P, Scheltema RA, Howes SC, Kotecha A, Fedry J, Förster F [Pubmed: 36697828] [DOI: 10.1038/s41586-022-05638-5] |
1.1 TB | 4.5 - 9.3 Å |
| 2023-03-13 |  |
Tilt series of authentic mumps virus nucleocapsid isolated from lysate of chronically infected HeLa cells under arsenite stress [840 tilt series in TIFF format] | Zhang X, Mahamid J | 27.9 GB | 4.5 - 6.3 Å |
| 2021-09-22 |  |
Open linker DNA nucleosome reconstituted with GUB DNA [1576 multi-frame micrographs composed of 50 frames each in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
777.0 GB | 4.52 Å |
| 2022-07-15 |  |
Single particle cryo-EM dataset of mouse heavy chain apoferritin in plunge-frozen vitrified ice [167 multi-frame micrographs composed of 30 frames each in MRC format] | Harder OF, Voss JM, Olshin PK, Drabbels M, Lorenz UJ [Pubmed: 35775987] [DOI: 10.1107/S205979832200554X] |
82.8 GB | 4.57 Å |
| 2021-11-30 |  |
Rabbit Muscle Aldolase 20% glycerol, 300kV [2608 multi-frame micrographs composed of 50 frames each in TIFF format] | Basanta B, Hirschi M, Lander GC [Pubmed: 34981768] [DOI: 10.1107/S2059798321012110] |
580.1 GB | 4.6 Å |
| 2022-08-19 |  |
Single particle cryo-EM of the human CST•Polα/Primase (POLA1ΔN) complex in a recruitment state [9885 micrographs in MRC format] | Cai SW [Pubmed: 35578024] [DOI: 10.1038/s41594-022-00766-y] |
869.0 GB | 4.6 Å |
| 2023-12-12 |  |
Optimizing Cryo-FIB Lamellas for sub-5Å in situ Structural Biology [multiple data sets in MRC format] | Khavnekar S, Vrbovská V, Zaoralová M, Kelley R, Beck F, Kotecha A, Plitzko JM, Erdmann PS [DOI: 10.1101/2022.06.16.496417] |
1.5 TB | 4.6 Å |
| 2018-01-31 |  |
Volta phase plate data collection facilitates image processing and cryo-EM structure determination [219 multi-frame micrographs composed of 30 frames each in TIFF format] | von Loeffelholz O, Klaholz BP [Pubmed: 29337113] [DOI: 10.1016/j.jsb.2018.01.003] |
45.9 GB | 4.6 Å |
| 2022-11-01 |  |
CryoEM single particle dataset of delta-latroinsectotoxin dimer [2338 multi-frame micrographs composed of 60 frames each in TIFF format] | Gatsogiannis C, Chen M [Pubmed: 34845192] [DOI: 10.1038/s41467-021-26562-8] |
1.4 TB | 4.63 Å |
| 2019-10-09 |  |
Single particle cryo-EM dataset of the triskelion hub subparticle extraction from clathrin cages [multiple data sets in MRCS format] | Morris KL, Jones JR, Halebian M, Wu S, Baker M, Armache JP, Avila Ibarra A, Sessions RB, Cameron AD, Cheng Y, Smith CJ [Pubmed: 31582853] [DOI: 10.1038/s41594-019-0292-0] |
88.4 GB | 4.69 - 7.79 Å |
| 2023-07-06 |  |
CryoEM micrographs of slipper limpet (Crepidula fornicata) hemocyanin [856 multi-frame micrographs composed of 30 frames each in MRC format] | Young MT, Pasqualetto G, Clare D [Pubmed: 37347755] [DOI: 10.1371/journal.pone.0287294] |
802.5 GB | 4.7 - 7.0 Å |
| 2015-06-04 |  |
Raw data for the 3D structure of horse spleen apoferritin determined by electron cryomicroscopy [multiple data sets in MRC format] | Russo CJ, Passmore LA [Pubmed: 25504723] [DOI: 10.1126/science.1259530] |
180.0 GB | 4.7 Å |
| 2023-01-18 |  |
Multishot Tomography for High-Resolution In Situ Subtomogram Averaging: RiboProt singleshot [39 tilt series in MRC format] | Khavnekar S, Erdmann PSE, Plitzko J [Pubmed: 36343843] [DOI: 10.1016/j.jsb.2022.107911] |
122.2 GB | 4.7 - 7.8 Å |
| 2023-01-18 |  |
Multishot Tomography for High-Resolution In Situ Subtomogram Averaging: RiboProt multishot (2 shots) [26 tilt series in MRC format] | Khavnekar S, Erdmann PSE, Plitzko J [Pubmed: 36343843] [DOI: 10.1016/j.jsb.2022.107911] |
78.0 GB | 4.7 - 8.3 Å |
| 2016-06-17 |  |
Cryo-EM Structure of the Activated NAIP2/NLRC4 Inflammasome Reveals Nucleated Polymerization [multiple data sets in SPIDER and MRC formats] | Zhang L, Chen S, Ruan J, Wu J, Tong AB, Yin Q, Li Y, David L, Lu A, Wang WL, Marks C, Ouyang Q, Zhang X, Mao Y, Wu H [Pubmed: 26449474] [DOI: 10.1126/science.aac5789] |
1.7 TB | 4.7 - 12.5 Å |
| 2023-08-20 |  |
AP2 bound to Y-cargo motif of Tgn38 in the presence of heparin [5958 micrographs in MRC format] | Partlow EA, Cannon KS, Hollopeter G, Baker RW [Pubmed: 35347313] [DOI: 10.1038/s41594-022-00749-z] |
523.1 GB | 4.7 Å |
| 2017-08-29 |  |
Cryo-EM structure of Hrd1 and Hrd3 complex [multiple data sets in MRC format] | Mi WM, Schoebel SS, Stein AS, Rapoport TAR, Liao ML [Pubmed: 28682307] [DOI: 10.1038/nature23314] |
708.3 GB | 4.7 Å |
