Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2023-08-18 |  |
Cryo-EM structure of the wild-type solitary ECF module in DDM micelles in the ATPase open and nucleotide-free conformation (200 kV) [1862 multi-frame micrographs composed of 60 frames each in TIFF format] | Thangaratnarajah C, Rheinberger J, Paulino C, Slotboom DJ [Pubmed: 37491368] [DOI: 10.1038/s41467-023-40266-1] |
360.8 GB | 4.3 Å |
| 2016-08-03 |  |
Multiple capsid-stabilizing protein-RNA and protein-protein interactions revealed in a high-resolution structure of an emerging picornavirus causing neonatal sepsis [multiple data sets in MRC and RAW FEI formats] | Shakeel S, Westerhuis BM, Domanska A, Koning RI, Matadeen R, Koster AJ, Bakker AQ, Beaumont T, Wolthers KC, Butcher SJ [Pubmed: 27435188] [DOI: 10.1038/NCOMMS11387] |
3.3 TB | 4.3 Å |
| 2022-10-31 |  |
Cryo-EM dataset of P.berghei kinesin-8B motor domains in no nucleotide state bound to tubulin dimer [multiple data sets in MRC format] | Liu T, Shilliday F, Cook AD, Moores CA [Pubmed: 36384964] [DOI: 10.1038/s41467-022-34710-x] |
890.0 GB | 4.3 Å |
| 2020-11-27 |  |
Cryo-EM structure of the prefusion state of canine distemper virus fusion protein ectodomain [1604 multi-frame micrographs composed of 48 frames each in TIFF format] | Kalbermatter DK, Shrestha NS, Gall FMG, Wyss MW, Riedl RR, Plattet PP, Fotiadis DF [Pubmed: 32647825] [DOI: 10.1016/j.yjsbx.2020.100021] |
474.1 GB | 4.3 Å |
| 2023-08-24 |  |
In situ cryo-ET dataset of S. cerevisiae prepared using cryo-plasmaFIB milling [260 tilt series in MRC format] | Khavnekar S, Kelley R, Kotecha A [DOI: 10.1101/2023.08.18.553799] |
3.0 TB | 4.3 - 4.7 Å |
| 2020-09-25 |  |
A "drug sweeping" state of the TriABC triclosan efflux pump from Pseudomonas aeruginosa [multiple data sets in MRCS format] | Fabre L, Abigail LT, Ntreh AT, Amira A, Yazidi A, Inga IV, Weeks JW, Leus IV, Jon JW, Sudipta S, Ruickoldt J, Jakob J, Rouiller I, Zgurskaya HI, Isabelle I, Sygusch J, Helen HI, Jurgen J [Pubmed: 32966762] [DOI: 10.1016/j.str.2020.09.001] |
238.7 GB | 4.3 - 20.0 Å |
| 2018-06-11 |  |
RNA Polymerase III initially transcribing complex [multiple data sets in TIFF and MRC formats] | Vorländer MK, Khatter H, Wetzel R, Hagen WJH, Müller CW [Pubmed: 29345638] [DOI: 10.1038/nature25440] |
1.6 TB | 4.3 Å |
| 2023-11-07 |  |
Single particle cryo-EM dataset of extended cowpea chlorotic mottle virus at pH 7.6 in laser-melted and revitrified ice [6200 multi-frame micrographs composed of 651 frames each in EER format] | Harder OF, Barrass SV, Drabbels M, Lorenz UJ [Pubmed: 37704664] [DOI: 10.1038/s41467-023-41444-x] |
980.5 GB | 4.3 Å |
| 2018-10-23 |  |
Cryo-electron microscopy data of thermostabilized avian CFTR [stack of 2 particles in MRCS format] | Fay JF [Pubmed: 30281975] [DOI: 10.1021/acs.biochem.8b00763] |
19.3 GB | 4.3 - 6.6 Å |
| 2022-04-19 |  |
Cryo-EM micrographs of BMV TLS RNA [multiple data sets in MRC format] | Bonilla SL, Sherlock ME, MacFadden A, Kieft JS [Pubmed: 34793227] [DOI: 10.1126/science.abe8526] |
6.7 TB | 4.3 Å |
| 2022-07-26 |  |
Cryo electron images of mitochondrial Hsp60 [8055 multi-frame micrographs composed of 22 frames each in TIFF format] | Walti MA [Pubmed: 34688687] [DOI: 10.1016/j.jmb.2021.167322] |
2.5 TB | 4.35 Å |
| 2020-10-09 |  |
mouse cGAS with nucleosomes from 293T [2979 multi-frame micrographs composed of 40 frames each in MRC format] | Zhao B, Xu P, Rowlett CM, Jing T, Shinde O, Lei Y, West AP, Liu WR, Li P [Pubmed: 32911481] [DOI: 10.1038/s41586-020-2749-z] |
1.5 TB | 4.36 Å |
| 2021-11-09 |  |
CryoEM structure of human LRRC8D [3399 multi-frame micrographs composed of 40 frames each in TIFF format] | Nakamura R, Kasuya G, Yokoyama T, Shirouzu M, Ishitani R, Nureki O [Pubmed: 32415200] [DOI: 10.1038/s42003-020-0951-z] |
1.7 TB | 4.36 Å |
| 2022-01-18 |  |
High-resolution mapping of metal ions reveals principles of surface layer assembly in Caulobacter crescentus cells [multiple data sets in TIFF and MRC formats] | von Kugelgen A, Bharat TAM [Pubmed: 34800371] [DOI: 10.1016/j.str.2021.10.012] |
304.4 GB | 4.37 Å |
| 2021-10-22 |  |
Single particle cryo-EM of human mitochondrial ribosomes from Pde12 KO cells [46109 multi-frame micrographs composed of 39 frames each in TIFF format] | Desai N, Yang H, Chandrasekaran V, Kazi R, Minczuk M, Ramakrishnan V [Pubmed: 33243891] [DOI: 10.1126/science.abc7782] |
45.7 TB | 4.4 Å |
| 2016-02-04 |  |
Volta phase plate cryo-EM of the small protein complex Prx3 [multiple data sets in MRC and dat formats] | Khoshouei MK [Pubmed: 26817416] [DOI: 10.1038/ncomms10534] |
612.5 GB | 4.4 Å |
| 2022-11-11 |  |
Cryo-EM structure of full-length human immunoglobulin M [43331 micrographs in MRC format] | Chen Q, Rosenthal PB, Tolar P [Pubmed: 36274064] [DOI: 10.1038/s41467-022-34090-2] |
2.6 TB | 4.4 Å |
| 2022-03-28 |  |
Single particle Cryo-EM data set for study the structural basis of Phosphatidylinositol 3-kinase type 2α (PI3KC2α) [multiple data sets in MRC format] | Lo WT, Zhang Y, Vadas O, Roske Y, Gulluni F, De Santis MC, Zagar AV, Stephanowitz H, Hirsch E, Liu F, Daumke O, Kudryashev M, Haucke V [Pubmed: 35256802] [DOI: 10.1038/s41594-022-00730-w] |
5.1 TB | 4.4 Å |
| 2018-01-26 |  |
Volta phase plate data collection facilitates image processing and cryo-EM structure determination [435 multi-frame micrographs composed of 30 frames each in TIFF format] | von Loeffelholz O, Klaholz BP [Pubmed: 29337113] [DOI: 10.1016/j.jsb.2018.01.003] |
89.4 GB | 4.4 Å |
| 2023-03-27 |  |
mouse ACE2 receptor bound to SARS-CoV-2 variant Beta Spike [5671 multi-frame micrographs composed of 40 frames each in MRC format] | Ni D, Myasnikov A, Stahlberg S, Lau K [DOI: 10.1371/journal.ppat.1011206] |
3.8 TB | 4.4 Å |
| 2018-09-10 |  |
Cryo electron microscopy micrographs of yeast Exocyst complex [6472 multi-frame micrographs composed of 32 frames each in MRCS format] | Wang HW, Guo W, Li Y, Mei KR [Pubmed: 29335562] [DOI: 10.1038/s41594-017-0016-2] |
10.0 TB | 4.4 Å |
| 2024-01-23 |  |
SPA cryo-EM micrographs of chicken ubiquitinated FANCD2-FANCI3D with ds 44-bpDNA [6515 multi-frame micrographs composed of 40 frames each in MRC format] | Sijacki T, Alcon P, Chen ZA, McLaughlin SH, Shakeel S, Rappsilber J, Passmore LA [Pubmed: 36050501] [DOI: 10.1038/s41594-022-00820-9] |
866.4 GB | 4.4 Å |
| 2022-06-21 |  |
Cryo-electron microscopy reconstruction of ATP-bound PCAT1 in an outward-facing conformation in a Mg2+ free condition [5994 multi-frame micrographs composed of 50 frames each in TIFF format] | Kieuvongngam V, Chen J [Pubmed: 35074919] [DOI: 10.1073/pnas.2120534119] |
2.6 TB | 4.5 Å |
| 2022-02-15 |  |
Structure of N-terminal deleted human pannexin-1 in nanodisc [3841 micrographs in MRC format] | Kuzuya M, Hirano H, Hayashida K, Watanabe M, Kobayashi K, Terada T, Mahmood MI, Tama F, Tani K, Fujiyoshi Y, Oshima A [Pubmed: 35133866] [DOI: 10.1126/scisignal.abg6941] |
203.7 GB | 4.5 Å |
| 2013-07-06 |  |
S.cereviseae 80S ribosome direct electron detetector dataset [260 multi-frame micrographs composed of 16 frames each in MRCS format] | Bai XC, Fernandez IS, McMullan G, Scheres SH [Pubmed: 23427024] [DOI: 10.7554/eLife.00461] |
260.0 GB | 4.5 Å |
