EMPIAR-10050 - Volta phase plate cryo-EM of the small protein complex Prx3 [multiple data sets in MRC and Other formats]

EMPIAR-10050

Volta phase plate cryo-EM of the small protein complex Prx3 [multiple data sets in MRC and Other formats]

Publication:

Volta phase plate cryo-EM of the small protein complex Prx3

Khoshouei M, Radjainia M, Phillips AJ, Gerrard JA, Mitra AK, Plitzko JM, Baumeister W, Danev R

Nat Commun 7 (2016) 10534

PMID: 26817416

DOI: doi:10.1038/ncomms10534

Related EMDB entry:

EMD-3233

Deposited:

2015-12-11

Released:

2016-02-04

Last modified:

2016-02-04

Imageset size:

612.45 GB

Imageset DOI:

10.6019/EMPIAR-10050

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe
micrographs - single frame

Image Sets

1. VPP_Prx3_4.4res

Category:

micrographs - multiframe

Image format:

MRC

No. of images or tilt series:

802

Image size:

(3838, 3710)

Pixel type:

SIGNED 16 BIT INTEGER

Pixel spacing:

(1.74, 1.74)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

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2. VPP_Prx3_7.3res

Category:

micrographs - multiframe

Image format:

MRC

No. of images or tilt series:

Image size:

(3838, 3710)

Pixel type:

SIGNED 16 BIT INTEGER

Pixel spacing:

(1.35, 1.35)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

3. No_VPP_mrc_files

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

176

Image size:

(3838, 3710)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.35, 1.35)

Details:

---

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

4. No_VPP_dat_files

Category:

micrographs - multiframe

Image format:

Other

No. of images or tilt series:

150

Image size:

(3838, 3710)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(1.35, 1.35)

Details:

.dat files can be opened with TOM software

Files:

Archives and downloads the selected files into an uncompressed zip file.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

Point cloud deformation modeling for particle selection following cryo-EM 2D classification.

Wang X, Mo Z, Li F, Zhang F, Wan X. (2026)

ICECREAM: high-fidelity equivariant cryo-electron tomography.

Kishore V, Debarnot V, Righetto RD, Engel BD, Dokmanić I. (2026)

CryoSift: an accessible and automated CNN-driven tool for cryo-EM 2D class selection.

Schäfer JH, Calza A, Hom K, Damodar P, Peng R, Bogdanović N, Lander GC, Stagg SM, Cianfrocco MA. (2025)