Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2025-04-07 |  |
Cryo-EM structure of the D87G lysozyme amyloid fibril [2013 multi-frame micrographs composed of 40 frames each in TIFF format] | Karimi-Farsijani S, Schmidt M, Fändrich M [Pubmed: 39511224] [DOI: 10.1038/s41467-024-54091-7] |
351.2 GB | 2.8 Å |
| 2018-01-03 |  |
3D reconstruction of the tubular system of preterm G55/57, mid term G58/60 and term G66/68 of guinea pig left ventricles [318 multi-frame micrographs composed of 1 frames each in TIFF format] | Kashbour H, Taggart M | 2.9 GB | — |
| 2018-01-03 |  |
Segment /nodes network analysis of the tubular system of the prenatal stages of GP cardiomyocyte [254 multi-frame micrographs composed of 1 frames each in TIFF format] | Kashbour H, Taggart M | 1.9 GB | — |
| 2018-01-03 |  |
3D reconstruction of the cardiac mitochondria in Neaonate and Adult GP cardiomyocyte [262 multi-frame micrographs composed of 1 frames each in TIFF format] | Kashbour H, Taggart M, White K | 1.2 GB | — |
| 2018-01-03 |  |
3D reconstruction of cardiac mitochondria in earlly prenatal (G55/57) and mid term(G58/60) and term (G66/68) GP cardiomyocyte [341 multi-frame micrographs composed of 1 frames each in TIFF format] | Kashbour H, Taggart M, White K | 1.7 GB | — |
| 2018-01-03 |  |
Segment /nodes network analysis of the tubular system of the Neonate and Adult GP cardiomyocyte [167 multi-frame micrographs composed of 1 frames each in TIFF format] | Kashbour H, Taggart M, White K | 787.5 MB | — |
| 2021-02-17 |  |
Raw cryo- and negative stain micrographs of a native extract from C. thermophilum used to reconstruct oxo acid dehydrogenase complexes [0 multi-frame micrographs composed of 0 frames each in MRC format] | Kastritis PLK [Pubmed: 33567276] [DOI: 10.1016/j.celrep.2021.108727] |
5.4 TB | 6.9 Å |
| 2018-08-23 |  |
CryoEM structure of human LRRC8A [5805 multi-frame micrographs composed of 40 frames each in TIFF format] | Kasuya G, Nakane T, Yokoyama T, Shirouzu M, Ishitani R, Nureki O [Pubmed: 30127360] [DOI: 10.1038/s41594-018-0109-6] |
2.9 TB | 4.25 Å |
| 2020-12-04 |  |
Cryo-EM Structure of PSII at 1.95 angstrom resolution [2160 multi-frame micrographs composed of 50 frames each in TIFF format] | Kato K, Miyazaki N, Hamaguchi T, Nakajima Y, Akita F, Yonekura K, Shen J [Pubmed: 33753866] [DOI: 10.1038/s42003-021-01919-3] |
427.6 GB | 1.95 Å |
| 2025-03-04 |  |
PSI-FCPI of the diatom Thalassiosira pseudonana CCMP1335 [8950 multi-frame micrographs composed of 50 frames each in TIFF format] | Kato K, Nagao R, Nakajima Y, Shen JR [Pubmed: 39480899] [DOI: 10.7554/eLife.99858] |
1.7 TB | 2.3 Å |
| 2025-06-13 |  |
PSI-LHCI of the red alga Galdieria sulphuraria NIES-3638 [8800 multi-frame micrographs composed of 50 frames each in TIFF format] | Kato K, Nakajima Y, Shen JR, Nagao R [Pubmed: 40378202] [DOI: 10.1126/sciadv.adv7488] |
1.7 TB | 2.19 Å |
| 2024-02-01 |  |
Structure and engineering of the type III-E CRISPR-Cas7-11 effector complex [2781 multi-frame micrographs composed of 64 frames each in TIFF format] | Kato K, Okazaki S, Isayama Y, Nishizawa T, Nishimasu H [Pubmed: 35643083] [DOI: 10.1016/j.cell.2022.05.003] |
853.6 GB | 2.45 Å |
| 2024-02-06 |  |
RNA-triggered protein cleavage and cell growth arrest by the type III-E CRISPR nuclease-protease [multiple data sets in TIFF format] | Kato K, Okazaki S, Ishikawa J, Isayama Y, Nishizawa T, Nishimasu H [Pubmed: 36423304] [DOI: 10.1126/science.add7347] |
2.6 TB | 2.49 - 2.84 Å |
| 2022-09-20 |  |
Human amino acid transporter EAAT2 [multiple data sets in TIFF format] | Kato T, Kusakizako T, Yamashita K, Nishizawa T, Nureki O [Pubmed: 35953475] [DOI: 10.1038/s41467-022-32442-6] |
1.5 TB | 3.49 - 3.58 Å |
| 2019-02-19 |  |
The 1.54 Å structure of Apoferritin by CRYOARM300 with cold-FEG [972 multi-frame micrographs composed of 50 frames each in TIFF format] | Kato T, Makino F, Nakane T, Terahara N, Kaneko T, Shimizu Y, Motoki S, Ishikawa I, Yonekura K, Namba K [DOI: 10.1017/S1431927619005725] |
145.9 GB | 1.54 Å |
| 2018-08-15 |  |
The first reconstruction of beta-galactosidase solved by cryoARM200 [1338 multi-frame micrographs composed of 49 frames each in TIFF format] | Kato T, Terehara N, Namba K | 321.4 GB | 2.6 Å |
| 2022-06-13 |  |
Structural and functional analyses of the tridomain-nonribosomal peptide synthetase FmoA3 for 4-methyloxazoline ring formation [1886 multi-frame micrographs composed of 39 frames each in TIFF format] | Katsuyama Y, Sone K, Harada A, Kawai S, Urano N, Adachi N, Moriya T, Kawasaki M, Shin-Ya K, Senda T, Ohnishi Y [Pubmed: 33783097] [DOI: 10.1002/anie.202102760] |
1.4 TB | 3.55 Å |
| 2024-02-13 |  |
Cryo electron microscopy of Virus-like Particle based on PVY coat protein [502 multi-frame micrographs composed of 40 frames each in TIFF format] | Kavcic L, Kezar A [Pubmed: 38233506] [DOI: 10.1038/s42004-024-01100-x] |
379.4 GB | 2.99 - 3.34 Å |
| 2024-03-26 |  |
Cryo electron microscopy of Virus-like Particle based on PVY coat protein with dC40 deletion [6215 multi-frame micrographs composed of 40 frames each in TIFF format] | Kavcic L, Kezar A [Pubmed: 38233506] [DOI: 10.1038/s42004-024-01100-x] |
5.8 TB | 3.09 - 3.5 Å |
| 2024-02-13 |  |
Cryo electron microscopy of Virus-like Particle based on PVY coat protein with dC79 deletion [491 multi-frame micrographs composed of 41 frames each in TIFF format] | Kavcic L, Kezar A [Pubmed: 38233506] [DOI: 10.1038/s42004-024-01100-x] |
377.4 GB | 3.2 Å |
| 2024-03-26 |  |
Cryo electron microscopy of assemblies based on truncated PVY coat protein [2862 multi-frame micrographs composed of 44 frames each in TIFF format] | Kavcic L, Kezar A [Pubmed: 38233506] [DOI: 10.1038/s42004-024-01100-x] |
2.3 TB | 2.93 - 3.62 Å |
| 2024-02-29 |  |
Cryo electron microscopy of assemblies based on truncated PVY coat protein with K176C mutation [9480 multi-frame micrographs composed of 32 frames each in TIFF format] | Kavcic L, Kezar A [Pubmed: 38233506] [DOI: 10.1038/s42004-024-01100-x] |
957.1 GB | 2.99 - 3.16 Å |
| 2024-02-13 |  |
Cryo electron microscopy of Virus-like Particle based on PVY coat protein with T43C and D136C mutation [461 multi-frame micrographs composed of 38 frames each in TIFF format] | Kavcic L, Kezar A [Pubmed: 38233506] [DOI: 10.1038/s42004-024-01100-x] |
332.6 GB | 2.41 Å |
| 2025-06-19 |  |
ATP-Dependent Diazotase, CmaA6 [7963 multi-frame micrographs composed of 158 frames each in EER format] | Kawai S, Karasawa M, Moriwaki Y, Terada T, Katsuyama Y, Ohnishi Y [Pubmed: 40275441] [DOI: 10.1002/anie.202505851] |
6.0 TB | 3.48 Å |
| 2022-08-08 |  |
Cryo-EM structure of MrgD-Gi complex with beta-alanine [17087 multi-frame micrographs composed of 66 frames each in TIFF format] | Kawamoto A [Pubmed: 35840655] [DOI: 10.1038/s42003-022-03668-3] |
4.1 TB | 3.1 - 3.2 Å |
