Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2025-03-28 |  |
Pre-turnover condition dataset for Bacillus subtilis class Ib ribonucleotide reductase [3476 multi-frame micrographs composed of 50 frames each in TIFF format] | Xu D, Thomas WC, Burnim AA, Ando N [Pubmed: 40075098] [DOI: 10.1038/s41467-025-57735-4] |
1.1 TB | 2.42 - 3.9 Å |
| 2025-03-28 |  |
Cryo-electron tomography of synaptosomes [multiple data sets in MRC format] | Rong Sun RS [DOI: 10.1083/jcb.202406133] |
760.7 GB | 24.0 - 26.0 Å |
| 2025-03-24 |  |
Human Elp123 in complex with glutamine tRNA, acetyl-CoA, 5'-deoxyadenosine and methionine [4214 multi-frame micrographs composed of 40 frames each in TIFF format] | Jaciuk M [Pubmed: 38750017] [DOI: 10.1038/s41467-024-48251-y] |
1.3 TB | 2.87 Å |
| 2025-03-24 |  |
Array Tomography of Pdzd8 cKO and Fkbp8 KD MEF [multiple data sets in PNG format] | Hirabayashi Y, Nakamura K | 5.9 GB | — |
| 2025-03-21 |  |
Unaligned cryo-EM micrographs of HCN4 channel bound to Ivabradine [31670 multi-frame micrographs composed of 40 frames each in TIFF format] | Saponaro A, Chaves-Sanjuan A, Sharifzadeh AS, Clarke OB, Marabelli C, Bolognesi M, Thiel G, Moroni A [Pubmed: 38917012] [DOI: 10.1073/pnas.2402259121] |
9.3 TB | 3.6 Å |
| 2025-03-21 |  |
Single-particle cryo-EM unaligned micrographs of antibody T5-1E08 in complex with H7N9 Influenza Hemagglutinin Trimer (A/Shanghai/2/13) [3383 multi-frame micrographs composed of 50 frames each in TIFF format] | Cerutti G [DOI: 10.1016/j.str.2025.02.010] |
869.1 GB | 3.18 Å |
| 2025-03-21 |  |
Single-particle cryo-EM unaligned micrographs of Sevenless extracellular domain (pH 6.6) [5365 multi-frame micrographs composed of 50 frames each in TIFF format] | Cerutti G [Pubmed: 39510067] [DOI: 10.1016/j.molcel.2024.10.017] |
1.3 TB | 3.06 Å |
| 2025-03-21 |  |
Single-particle cryo-EM unaligned micrographs of antibody T5-1E11 in complex with stabilized H1N1 Influenza Hemagglutinin Trimer (A/Kiev/1/57) [6586 multi-frame micrographs composed of 40 frames each in TIFF format] | Cerutti G [DOI: 10.1016/j.str.2025.02.010] |
1.4 TB | 2.98 Å |
| 2025-03-20 |  |
Single-particle cryo-EM structure of the RNA chaperone Hfq in a translation repression complex Hfq-Crc-estA [13651 multi-frame micrographs composed of 47 frames each in TIFF format] | Dendooven T, Sonnleitner E, Bläsi U, Luisi BF [Pubmed: 36504222] [DOI: 10.15252/embj.2022111129] |
4.3 TB | 4.5 Å |
| 2025-03-20 |  |
Cryo electron micrographs of Plastid-encoded RNA polymerase transcription elongation complex (PEP-TEC) from Sinapis alba [33330 multi-frame micrographs composed of 40 frames each in TIFF format] | Webster MW [Pubmed: 38428394] [DOI: 10.1016/j.cell.2024.01.036] |
5.9 TB | 2.62 - 5.0 Å |
| 2025-03-20 |  |
Movies of ΔCag3 Mutant Cag T4SS from Helicobacter pylori [3373 multi-frame micrographs composed of 40 frames each in TIFF format] | Sheedlo MJ, Chung JM, Sawhney N, Durie CL, Cover TL, Ohi MD, Lacy DB [Pubmed: 32876048] [DOI: 10.7554/eLife.59495] |
688.7 GB | 3.0 - 3.1 Å |
| 2025-03-20 |  |
Efficient cell-wide mapping of mitochondria in electron microscopic volumes using webKnossos [multiple data sets in TIFF format] | Jiang Y, Wang H, Boergens K, Rzepka N, Wang F, Hua Y [DOI: 10.1016/j.crmeth.2025.100989] |
996.4 GB | — |
| 2025-03-19 |  |
Cryo-electron tomography of optogenetically-induced lamellipodia [multiple data sets in MRC format] | Inaba H, Imasaki T, Aoyama K, Yoshihara S, Takasaki H, Kato T, Goto H, Mitsuoka K, Nitta R, Nakata T [DOI: 10.1101/2024.08.13.607852] |
57.8 GB | — |
| 2025-03-19 |  |
Cryo-EM data of hOAT4 [1 micrographs - focal pairs - unprocessed in TIFF format] | He JJ [Pubmed: 39146184] [DOI: 10.1016/j.celrep.2024.114628] |
1.1 TB | 3.1 Å |
| 2025-03-19 |  |
Cryo electron micrographs of DOPC vesicles after sonication [multiple data sets in TIFF and MRC formats] | Schönnenbeck PS, Junglas BJ, Sachse CS | 602.1 GB | — |
| 2025-03-19 |  |
Cryo electron micrographs of DOPC vesicles after extrusion with a 200 nm filter [multiple data sets in TIFF and MRC formats] | Schönnenbeck PS, Junglas BJ, Sachse CS | 261.9 GB | — |
| 2025-03-19 |  |
Cryo electron micrographs of 70% DOPG 30%DPPG vesicles [multiple data sets in TIFF and MRC formats] | Schönnenbeck PS, Junglas BJ, Sachse CS | 285.9 GB | — |
| 2025-03-19 |  |
Dataset of apoferritin on HexAuFoil grids [multiple data sets in TIFF format] | Weckener M, Naylor CE | 53.4 GB | — |
| 2025-03-19 |  |
Electron tomography of endosymbiotic bacteria inside a bacteriocyte of the cereal weevil Sitophilus oryzae [120 reconstructed volumes in MRC format] | Santarella-Mellwig RSM, Balmand SB, Schwab YS, Zaidman-Remy AZR | 260.8 MB | — |
| 2025-03-18 |  |
NADPH-dependent sulfite reductase minimal dimer [stack of 185000 particles in MRCS format] | Ghazi Esfahani BGE, Walia NW, Neselu KN, Aragon MA, Askenasy IA, Wei AW, Mendez JHM, Stroupe MES [Pubmed: 38915618] [DOI: 10.1101/2024.06.14.599029] |
70.5 GB | 2.78 Å |
| 2025-03-17 |  |
Cryo electron structure of the ectodomain of SPRING bound to the ectodomain of Site-one protease [4886 multi-frame micrographs composed of 50 frames each in TIFF format] | Kober DL [Pubmed: 38977690] [DOI: 10.1038/s41467-024-50068-8] |
2.9 TB | 2.3 Å |
| 2025-03-17 |  |
Rhodobacter microvirus Ebor attached to the outer membrane vesicle [27 tilt series in EER format] | Bardy P, MacDonald CIW, Kirchberger PC, Jenkins HT, Botka T, Byrom L, Alim NTB, Traore DAK, Konig HC, Nicholas TR, Chechik M, Hart SJ, Turkenburg JP, Blaza JN, Beatty JT, Fogg PCM, Antson AA [Pubmed: 38915634] [DOI: 10.1101/2024.06.11.598214] |
531.2 GB | 13.2 Å |
| 2025-03-17 |  |
TadA without nucleotide [21498 multi-frame micrographs composed of 44 frames each in TIFF format] | Hohl M, Low HH [Pubmed: 39103374] [DOI: 10.1038/s41467-024-50280-6] |
6.8 TB | 4.0 Å |
| 2025-03-17 |  |
Cytoplasmic ribosomes on mitochondria alter the local membrane environment for protein import [multiple data sets in TIFF and MRC formats] | Chang YT, Barad BA, Rahmani H, Zid BM, Grotjahn DA [Pubmed: 39071314] [DOI: 10.1083/jcb.202407110] |
764.2 GB | 8.0 - 15.0 Å |
| 2025-03-17 |  |
Cryo electron micrographs of Kaposi’s sarcoma-associated herpesvirus glycoprotein B in post-fusion conformation [14633 multi-frame micrographs composed of 49 frames each in TIFF format] | Ito F, Zhen J, Xie G, Huang H, Silva JC, Wu T-T, Zhou ZH [Pubmed: 39818969] [DOI: 10.1128/jvi.01533-24] |
3.5 TB | 3.3 Å |
