Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2024-11-06 |  |
Tilt series of Mycoplasma pneumoniae cells treated with chloramphenicol collected on Gatan K3 camera [139 multi-frame micrographs composed of 10 frames each in TIFF format] | Xue L, Spahn CMT, Schacherl M, Mahamid J | 170.5 GB | 3.0 Å |
| 2024-11-06 |  |
Comparative 3D ultrastructure of Plasmodium falciparum gametocytes [multiple data sets in TIFF format] | Evers F, Roverts R, Boshoven C, Lindert MK, Sinden RE, Akiva A, Kooij TWA, Verhoef JMJ, Sommerdijk N [DOI: 10.1101/2023.03.10.531920] |
239.1 GB | — |
| 2024-11-06 |  |
Low-dose cryo-electron ptychography of Phi-92 Bacteriophage at 5.1 mrad [100 diffraction images in BIG DATA VIEWER HDF5 format] | Küçükoğlu BK, Mohammed IM, Guerrero-Ferreira RCG, Kube MK, Radecke JR, Ribet SR, Varnavides GV, Leidl MLL, Lau KL, Nazarov SN, Myasnikov AM, Sachse CS, Müller-Caspary KMC, Ophus CO, Stahlberg HS [Pubmed: 39277607] [DOI: 10.1038/s41467-024-52403-5] |
137.4 GB | 5.8 - 12.3 Å |
| 2024-11-06 |  |
Array Tomography of zebrafish axillary lymphoid organ - an external, experimentally accessible immune organ in the zebrafish [multiple data sets in TIFF format] | Castranova D, Dell CW, Narayan K, Weinstein BM [DOI: 10.1101/2024.07.25.605139] |
11.4 GB | — |
| 2024-11-04 |  |
CryoEM structure of a post-assembly MS-ring reveals plasticity in stoichiometry and conformation [11627 multi-frame micrographs composed of 50 frames each in MRC format] | Singh PK, Iverson TM [Pubmed: 37205674] [DOI: 10.1371/journal.pone.0285343] |
21.7 TB | 2.9 - 4.1 Å |
| 2024-10-25 |  |
Rules of engagement for cohesin and condensin complexes during mitotic chromosome formation [multiple data sets in DM4 format] | Cisneros- Soberanis F, Abad MA, Medina-Pritchard B, Jeyaprakash AA, Gibcus JHG, Dekker J, Paulson JR, Xie L, Prior IA, Beckett AJ, Earnshaw WC, Samejima I, Samejima K, Pucekova N, Minry L, Goloborodko A, Abraham S | 19.0 GB | — |
| 2024-10-11 |  |
CryoEM ice images and labels used for VirtualIce [multiple data sets in MRC, MRCS and JPEG formats] | Noble AJ [DOI: 10.1101/2024.09.28.615520] |
308.6 GB | — |
| 2024-10-10 |  |
Structural basis for directional rotation of the Salmonella flagellum [39322 multi-frame micrographs composed of 50 frames each in TIFF format] | Singh PK, Iverson TM [Pubmed: 38632342] [DOI: 10.1038/s41564-024-01674-1] |
9.1 TB | 3.4 - 6.7 Å |
| 2024-10-09 |  |
Purified Photoreceptor Cell Rootlet Tomograms [multiple data sets in MRC and TIFF formats] | van Hoorn C, Carter AP [DOI: 10.7554/eLife.91642.1] |
440.0 GB | — |
| 2024-10-09 |  |
Cryo-EM structure of in-vitro alpha-synuclein fibril [5193 multi-frame micrographs composed of 40 frames each in TIFF format] | Sanchez JC, Borcik CG, Tonelli M, Sibert B, Rienstra CM, Wright ER | 789.6 GB | 2.04 Å |
| 2024-10-09 |  |
Cryo-EM Micrographs of Amyloid Fibrils of Mixed 0N4R and 0N3R Tau Seeded with Alzheimer's Disease Tau from Human Brain [7917 multi-frame micrographs composed of 45 frames each in TIFF format] | Duan P, Dregni AJ, Xu H, Changolkar L, Lee VM, Lee EB, Hong M [Pubmed: 39214304] [DOI: 10.1016/j.jbc.2024.107730] |
1.7 TB | 2.69 Å |
| 2024-10-08 |  |
In situ cryo-electron tomography of the T. pseudonana diatom PyShell [multiple data sets in MRC and TIFF formats] | Demulder M, Righetto RD, Wietrzynski W, Lamm L, Engel BD [DOI: 10.1016/j.cell.2024.09.013] |
81.8 GB | 20.0 Å |
| 2024-10-08 |  |
Cryo-ET tilt series of an HPIV3 escape variant (EV1). [12 tilt series in MRC format] | Marcink TC | 42.1 GB | 12.2 Å |
| 2024-10-08 |  |
Cryo-ET tilt series of an HPIV3 escape variant mutation (F-L234F). [16 tilt series in MRC format] | Marcink TC | 49.2 GB | 12.8 Å |
| 2024-10-08 |  |
Full-length mouse 5-HT3A receptor in complex with ALB148471, pre-activated and open-like [6312 multi-frame micrographs composed of 55 frames each in TIFF format] | Felt KCF, Chakrapani SC [Pubmed: 38177669] [DOI: 10.1038/s41594-023-01140-2] |
3.9 TB | 2.92 - 3.79 Å |
| 2024-10-04 |  |
Electron tomograms of high-pressure frozen-freeze substituted multivesicular endosomes [68 reconstructed volumes in MRC format] | Weiner E, Berryman E, Frey F, Gonzalez Solís A, Leier A, Marquez Lago T, Šarić A, Otegui MS | 66.2 GB | — |
| 2024-10-01 |  |
Cryo-ET tilt series of an HPIV3 escape variant (EV2). [12 tilt series in MRC format] | Marcink TC | 36.2 GB | 13.2 Å |
| 2024-09-26 |  |
Cryo-EM structure of uropathogenic Escherichia coli CysK:CdiA:tRNA complex [7044 multi-frame micrographs composed of 50 frames each in TIFF format] | Feng Z, Yashiro Y, Tomita K [Pubmed: 39228374] [DOI: 10.1093/nar/gkae735] |
1.5 TB | 2.6 - 3.04 Å |
| 2024-09-26 |  |
SBF SEM images of a notoroid in transverse orientation (Fig S24) [multiple data sets in DM4 and TIFF formats] | Marie-Charlotte Domart MCD, Lucy M Collinson LMC | 11.5 GB | — |
| 2024-09-26 |  |
SBF SEM images of a notoroid in longitudinal orientation containing TNE-ZsGreen+ notochord cells (Fig S26 part 1) [multiple data sets in DM4 and TIFF formats] | Marie-Charlotte Domart MCD, Lucy M Collinson LMC | 170.0 GB | — |
| 2024-09-26 |  |
SBF SEM images of a notoroid in longitudinal orientation containing TNE-ZsGreen+ notochord cells (Fig S26 part 2) [multiple data sets in DM4 and TIFF formats] | Marie-Charlotte Domart MCD, Lucy M Collinson LMC | 232.5 GB | — |
| 2024-09-26 |  |
SBF SEM images of a notoroid in longitudinal orientation containing TNE-ZsGreen+ notochord cells (Fig S26 part 3) [multiple data sets in DM4 and TIFF formats] | Marie-Charlotte Domart MCD, Lucy M Collinson LMC | 39.2 GB | — |
| 2024-09-23 |  |
FAST-EM array tomography data of wild-type MCF-7 cells prepared with the rOTO protocol and stained with uranyl acetate [5595 micrographs in TIFF format] | Kievits AJ, Duinkerken BHP, Lane R, de Heus C, van Beijeren Bergen en Henegouwen D, Höppener T, Wolters AHG, Liv N, Giepmans BNG, Hoogenboom JP | 561.3 GB | — |
| 2024-09-15 |  |
Human DNA polymerase alpha/primase - AavLEA1 (1:8 molar ratio) [2764 multi-frame micrographs composed of 53 frames each in TIFF format] | Abe KM, Li G, He Q, Grant T, Lim C | 843.0 GB | 3.63 Å |
| 2024-09-15 |  |
Cryo-EM structure of HflX bound to the Listeria monocytogenes 50S ribosomal subunit [4480 multi-frame micrographs composed of 20 frames each in TIFF format] | Koller TO, Wilson DN [Pubmed: 36300626] [DOI: 10.1093/nar/gkac934] |
320.2 GB | 2.1 - 3.1 Å |
