Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2024-11-19 |  |
Gallus gallus (chicken) calcium homeostasis modulator 1 (CALHM1) channel [5544 multi-frame micrographs composed of 30 frames each in TIFF format] | Syrjanen JL, Furukawa H [Pubmed: 37380652] [DOI: 10.1038/s41467-023-39388-3] |
1.0 TB | 3.36 Å |
| 2024-11-19 |  |
Raw data used to generate the structure of WT ACTG2 F-actin [526 multi-frame micrographs composed of 36 frames each in TIFF format] | Ceron RH, Baez-Cruz FA, Palmer NJ, Carman PJ, Boczkowska M, Heuckeroth RO, Ostap EM, Dominguez R, Barrie KR [Pubmed: 38820162] [DOI: 10.1126/sciadv.adn6615] |
243.0 GB | 2.45 Å |
| 2024-11-19 |  |
Raw data used to generate the structure of R257C ACTG2 F-actin [1021 multi-frame micrographs composed of 40 frames each in TIFF format] | Ceron RH, Baez-Cruz FA, Palmer NJ, Carman PJ, Boczkowska M, Heuckeroth RO, Ostap EM, Dominguez R, Barrie KR [Pubmed: 38820162] [DOI: 10.1126/sciadv.adn6615] |
470.9 GB | 2.72 Å |
| 2024-11-19 |  |
Raw data used to generate the structure of R40C ACTG2 F-actin [multiple data sets in TIFF format] | Ceron RH, Baez-Cruz FA, Palmer NJ, Carman PJ, Boczkowska M, Heuckeroth RO, Ostap EM, Dominguez R, Barrie KR [Pubmed: 38820162] [DOI: 10.1126/sciadv.adn6615] |
1.9 TB | 2.54 Å |
| 2024-11-19 |  |
FAST-EM array tomography data of rat pancreas prepared with rOTO protocol and stained with neodymium acetate [4805 micrographs in TIFF format] | Kievits AJ, Duinkerken BHP, Lane R, de Heus C, van Beijeren Bergen en Henegouwen D, Höppener T, Wolters AHG, Liv N, Giepmans BNG, Hoogenboom JP [Pubmed: 39119255] [DOI: 10.1515/mim-2024-0005] |
479.6 GB | — |
| 2024-11-19 |  |
Training Set for CryoVesNet - Cryo-electron tomograms of rat synaptosomes and synaptic vesicle segmentation [multiple data sets in MRC format] | Khosrozadeh A, Seeger R, Witz G, Radecke J, Sørensen JB, Zuber B [Pubmed: 36876590] [DOI: 10.1101/2022.04.10.487799] |
8.9 GB | — |
| 2024-11-19 |  |
Rubisco data taken with laser-off [126 multi-frame micrographs composed of 50 frames each in TIFF format] | Remis JP | 34.0 GB | 3.1 Å |
| 2024-11-19 |  |
Rubisco data taken with laser-on [126 multi-frame micrographs composed of 50 frames each in TIFF format] | Remis JP | 34.6 GB | 3.1 Å |
| 2024-11-19 |  |
Apoferritin data taken with laser-off [108 multi-frame micrographs composed of 150 frames each in TIFF format] | Remis JP | 38.2 GB | 2.6 Å |
| 2024-11-19 |  |
Apoferritin data taken with laser-on [209 multi-frame micrographs composed of 150 frames each in TIFF format] | Remis JP, Remis JP | 52.0 GB | 2.7 Å |
| 2024-11-12 |  |
Cryo-EM structure of T. pseudonana PyShell helical tube [5994 multi-frame micrographs composed of 52 frames each in TIFF format] | Kawamoto A, Tohda R, Gerle C, Kurisu G [Pubmed: 39357521] [DOI: 10.1016/j.cell.2024.09.013] |
1.4 TB | 2.4 Å |
| 2024-11-12 |  |
Low-dose cryo-electron ptychography of Tobacco Mosaic Virus at 6.1 mrad [114 diffraction images in BIG DATA VIEWER HDF5 format] | Küçükoğlu BK, Mohammed IM, Guerrero-Ferreira RCG, Kube MK, Radecke JR, Ribet SR, Varnavides GV, Leidl MLL, Lau KL, Nazarov SN, Myasnikov AM, Sachse CS, Müller-Caspary KMC, Ophus CO, Stahlberg HS [Pubmed: 39277607] [DOI: 10.1038/s41467-024-52403-5] |
128.4 GB | 5.8 - 12.3 Å |
| 2024-11-12 |  |
Cryo electron micrographs of Plastid-encoded RNA polymerase (PEP) from Sinapis alba [21347 multi-frame micrographs composed of 50 frames each in TIFF format] | Webster MW [Pubmed: 38428394] [DOI: 10.1016/j.cell.2024.01.036] |
4.5 TB | 2.3 - 2.9 Å |
| 2024-11-08 |  |
Cryo-electron microscopy of Avidin [14206 multi-frame micrographs composed of 623 frames each in EER format] | Nazarov S, Beckert Dominique B, Myasnikow A | 3.4 TB | 2.08 Å |
| 2024-11-08 |  |
Automethylated PRC2 dimer bound to nucleosome [multiple data sets in MRC format] | Sauer PV, Pavlenko E, Nogales E, Poepsel S, Cookis T [Pubmed: 39303719] [DOI: 10.1016/j.molcel.2024.08.025] |
1.8 TB | 4.0 - 6.2 Å |
| 2024-11-08 |  |
Cryo-EM structure of the gastric proton pump [multiple data sets in TIFF format] | Abe K, Yokoshima S, Yoshimori A [Pubmed: 37726448] [DOI: 10.1038/s42003-023-05334-8] |
7.3 TB | 2.08 - 2.26 Å |
| 2024-11-08 |  |
Cryo-EM SPA datasets of Streptococcus pneumoniae NADPH oxidase F397A mutant with NADPH under turnover conditions [multiple data sets in EER format] | Dubach VRA, San Segundo-Acosta P, Murphy BJ [Pubmed: 39039317] [DOI: 10.1038/s41594-024-01348-w] |
16.6 TB | 2.64 Å |
| 2024-11-06 |  |
Tilt series of Mycoplasma pneumoniae cells treated with chloramphenicol collected on Gatan K3 camera [139 multi-frame micrographs composed of 10 frames each in TIFF format] | Xue L, Spahn CMT, Schacherl M, Mahamid J | 170.5 GB | 3.0 Å |
| 2024-11-06 |  |
Comparative 3D ultrastructure of Plasmodium falciparum gametocytes [multiple data sets in TIFF format] | Evers F, Roverts R, Boshoven C, Lindert MK, Sinden RE, Akiva A, Kooij TWA, Verhoef JMJ, Sommerdijk N [DOI: 10.1101/2023.03.10.531920] |
239.1 GB | — |
| 2024-11-06 |  |
Low-dose cryo-electron ptychography of Phi-92 Bacteriophage at 5.1 mrad [100 diffraction images in BIG DATA VIEWER HDF5 format] | Küçükoğlu BK, Mohammed IM, Guerrero-Ferreira RCG, Kube MK, Radecke JR, Ribet SR, Varnavides GV, Leidl MLL, Lau KL, Nazarov SN, Myasnikov AM, Sachse CS, Müller-Caspary KMC, Ophus CO, Stahlberg HS [Pubmed: 39277607] [DOI: 10.1038/s41467-024-52403-5] |
137.4 GB | 5.8 - 12.3 Å |
| 2024-11-06 |  |
Array Tomography of zebrafish axillary lymphoid organ - an external, experimentally accessible immune organ in the zebrafish [multiple data sets in TIFF format] | Castranova D, Dell CW, Narayan K, Weinstein BM [DOI: 10.1101/2024.07.25.605139] |
11.4 GB | — |
| 2024-11-04 |  |
CryoEM structure of a post-assembly MS-ring reveals plasticity in stoichiometry and conformation [11627 multi-frame micrographs composed of 50 frames each in MRC format] | Singh PK, Iverson TM [Pubmed: 37205674] [DOI: 10.1371/journal.pone.0285343] |
11.7 TB | 2.9 - 4.1 Å |
| 2024-10-25 |  |
Rules of engagement for cohesin and condensin complexes during mitotic chromosome formation [multiple data sets in DM4 format] | Cisneros- Soberanis F, Abad MA, Medina-Pritchard B, Jeyaprakash AA, Gibcus JHG, Dekker J, Paulson JR, Xie L, Prior IA, Beckett AJ, Earnshaw WC, Samejima I, Samejima K, Pucekova N, Minry L, Goloborodko A, Abraham S | 19.0 GB | — |
| 2024-10-11 |  |
CryoEM ice images and labels used for VirtualIce [multiple data sets in MRC, MRCS and JPEG formats] | Noble AJ [DOI: 10.1101/2024.09.28.615520] |
308.6 GB | — |
| 2024-10-10 |  |
Structural basis for directional rotation of the Salmonella flagellum [39322 multi-frame micrographs composed of 50 frames each in TIFF format] | Singh PK, Iverson TM [Pubmed: 38632342] [DOI: 10.1038/s41564-024-01674-1] |
9.1 TB | 3.4 - 6.7 Å |
