EMPIAR-12034 - Cryo-electron micrographs of human phosphorylated STAT1-DNA complexes [6993 multi-frame micrographs composed of 54 frames each in TIFF format]

EMPIAR-12034

Cryo-electron micrographs of human phosphorylated STAT1-DNA complexes [6993 multi-frame micrographs composed of 54 frames each in TIFF format]

Publication:

Structural analysis reveals how tetrameric tyrosine-phosphorylated STAT1 is targeted by the rabies virus P-protein.

Minami M, Ugajin K, Inaba-Inoue S, Yabuno N, Takekawa Y, Xiaomei S, Takei S, Sasaki M, Nomai T, Jiang X, Kita S, Maenaka K, Hirose M, Yao M, Gooley PR, Moseley GW, Sugita Y, Ose T

Science signaling 18 (2025)

PMID: 40100957

DOI: 10.1126/scisignal.ads2210

Related EMDB entry:

EMD-39679

Deposited:

2024-04-09

Released:

2025-07-10

Last modified:

2025-07-10

Imageset size:

1.87 TB

Imageset DOI:

10.6019/EMPIAR-12034

Experimental metadata:

Download xml json

Deposited via PDBj

Contains:

micrographs - multiframe

Image Sets

1. 6993 K3 movies in TIFF

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

6993

Image size:

(5760, 4092)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.87, 0.87)

Details:

- Please use relion_gain.mrc as a gain reference without flipping or rotation.
- The dataset was collected with 3x3 image shifts. The shift direction is indicated in the file name (e.g. "X+0Y+0"). Data processing was done with a single optics group.
- The scope has a Cs corrector. The Cs after correction is 0.032 mm.
- The pixel size in the image header (0.87 Å/px) is not accurate. The right value is 0.88 Å/px. - The flux is 0.93 e/Å^2/frame.

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Citations

AlignPCA-2D: PCA-reduced Euclidean vector alignment for 2D classification in cryo-EM.

Ramírez-Aportela E, Zarrabeitia OL, Fonseca YC, Ceska T, Subramaniam S, Carazo JM, Sorzano COS. (2026)

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

Helical reconstruction of amyloids in cryoSPARC.

Schaefer JH, O'Neill RT, Donnelly JP, Powers ET, Kelly JW, Lander GC. (2026)

An unattended image-processing pipeline for on-the-fly quality assessment and 3D exploration in cryo-EM.

Marchán Torres D, Conesa P, Garcia A, Iceta M, Broche L, Gragera M, Linares R, Kwong HS, Chichón FJ, Svensson O, Arranz R, Effantin G, Kandiah E, Carazo JM, Sorzano COS. (2026)

CryoFSL: an annotation-efficient, few-shot learning framework for robust protein particle picking in cryo-electron microscopy micrographs.

Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model.

Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

See all citations

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