오사카 대학의 EMPIAR-PDBj 팀은, 아시아의 EM 연구자가 용량이 큰 EM 이미지를 EMPIAR 데이터베이스에 전송하는 것을 돕고 있습니다. 인터넷을 통하여 EBI (UK)에 직>접 데이터를 전송하는 대신, 이용자는 우편이나 택배를 통하여 하드 디스크를 오사카 대학으로 보내실 수 있습니다. 혹은 인터넷을 이용하여 오사카 대학의 서버로 전>송 하실 수 있습니다. 오사카 대학에 데이터 전송 서비스를 희망하시는 분은 데이터를 보내시기 전에 먼저 이메일 통하여 등록하시고 싶은 EM데이터에 관하여 상담하십시오.
Release date | Imageset | Title | Authors and references | Size | Resolution |
---|---|---|---|---|---|
2023-10-06 | Atypical flagella assembly and haploid genome coiling during male gamete formation in Plasmodium [multiple data sets in MRC format] | Hair M [DOI: 10.1101/2023.05.17.540968] |
100.7 GB | — | |
2017-03-13 | Bacteriophage P22 mature virion capsid protein [stack of 45150 particles in IMAGIC format] | Hryc CF, Chen D-H, Afonine PV, Jakana J, Wang Z, Haase-Pettingell C, Jiang W, Adams PD, King JA, Schmid MF, Chiu W [Pubmed: 28270620] [DOI: 10.1073/pnas.1621152114] |
159.4 GB | 3.3 Å | |
2021-06-18 | Bacteriophage PhiKZ non-virion RNA Polymerase [10741 multi-frame micrographs composed of 32 frames each in TIFF format] | de Martin Garrido N, Lai Wan Loong YTE, Aylett CHS [Pubmed: 34181731] [DOI: 10.1093/nar/gkab539] |
3.3 TB | 3.3 Å | |
2021-06-04 | Bacteriophage PhiKZ non-virion RNA Polymerase [8765 micrographs in MRC format] | de Martin Garrido N, Lai Wan Loong YTE, Aylett CHS [Pubmed: 34181731] [DOI: 10.1093/nar/gkab539] |
769.6 GB | 3.3 Å | |
2019-02-01 | Bdellovibrio bacteriovorus electron cryotomography tilt-series acquired by fast-incremental method [1 tilt series in MRC format] | Chreifi G, Chen S, Metskas LA, Kaplan M, Jensen GJ [Pubmed: 30639925] [DOI: 10.1016/j.jsb.2018.12.008] |
5.2 GB | — | |
2019-02-01 | Bdellovibrio electron cryotomography tilt-series acquired by continuous tilting [1 tilt series in MRC format] | Chreifi G, Chen S, Metskas LA, Kaplan M, Jensen GJ [Pubmed: 30639925] [DOI: 10.1016/j.jsb.2018.12.008] |
2.1 GB | — | |
2023-05-22 | Benchmark FIB SEM data (#2) of HeLa cells previously imaged by Zeiss LSM900 Airyscan microscopy [multiple data sets in TIFF format] | Peddie CJ, Domart MC, Collinson LM [DOI: 10.1101/2023.05.11.540445] |
511.9 GB | — | |
2021-10-29 | Benchmark FIB SEM data of HeLa cells previously imaged by Zeiss LSM900 Airyscan microscopy [multiple data sets in TIFF format] | Peddie CJ, Domart MC, Collinson L | 1.7 TB | — | |
2023-09-05 | Benchmark SBF SEM data of HeLa cells previously imaged by Zeiss LSM900 Airyscan microscopy [multiple data sets in DM4 and TIFF formats] | Domart MC, Collinson LM [DOI: 10.1101/2023.05.11.540445] |
39.2 GB | — | |
2018-06-13 | Benchmarking cryo-EM single particle analysis workflow [1614 multi-frame micrographs composed of 30 frames each in MRC format] | Kim LY, Rice WJ, Eng ET, Kopylov M, Cheng A, Raczkowski AM, Jordan KD, Bobe D, Potter CS, Carragher B [Pubmed: 29951483] [DOI: 10.3389/fmolb.2018.00050] |
85.6 GB | 2.4 - 2.8 Å | |
2018-05-11 | Benchmarking cryo-EM single particle analysis workflow [1626 multi-frame micrographs composed of 30 frames each in MRC format] | Kim LK, Rice WJ, Eng ET, Kopylov M, Cheng A, Raczkowski AM, Jordan KJ, Bobe D, Potter CS, Carragher B [Pubmed: 29951483] [DOI: 10.3389/fmolb.2018.00050] |
345.0 GB | 3.0 - 4.6 Å | |
2018-05-04 | Benchmarking cryo-EM single particle analysis workflow [699 multi-frame micrographs composed of 33 frames each in MRC format] | Kim LK, Rice WJ, Eng ET, Kopylov M, Cheng A, Raczkowski AR, Jordan KD, Bobe D, Potter CS, Carragher B [Pubmed: 29951483] [DOI: 10.3389/fmolb.2018.00050] |
37.3 GB | 2.5 - 2.8 Å | |
2018-12-13 | Beta-2-microglobulin fibrils with multiple polymorphs formed at pH 2 [5549 micrographs in MRC format] | Iadanza MG [Pubmed: 30375379] [DOI: 10.1038/s41467-018-06761-6] |
294.3 GB | 3.975 Å | |
2014-11-19 | Beta-galactosidase Falcon-II micrographs plus manually selected coordinates by Richard Henderson [84 micrographs in MRC format] | Scheres SH [Pubmed: 25486611] [DOI: 10.1016/j.jsb.2014.11.010] |
5.3 GB | 4.2 Å | |
2021-03-12 | Beta-galactosidase in complex with L-ribose [517 multi-frame micrographs composed of 75 frames each in TIFF format] | Saur M, Hartshorn MJ, Dong J, Reeks J, Bunkoczi G, Jhoti H, Williams PA [Pubmed: 31877353] [DOI: 10.1016/j.drudis.2019.12.006] |
669.1 GB | 2.3 Å | |
2021-03-12 | Beta-galactosidase in complex with PETG [562 multi-frame micrographs composed of 75 frames each in TIFF format] | Saur M, Hartshorn MJ, Dong J, Reeks J, Bunkoczi G, Jhoti H, Williams PA [Pubmed: 31877353] [DOI: 10.1016/j.drudis.2019.12.006] |
720.1 GB | 2.2 Å | |
2021-03-12 | Beta-galactosidase in complex with deoxygalacto-nojirimycin [598 multi-frame micrographs composed of 75 frames each in TIFF format] | Saur M, Hartshorn MJ, Dong J, Reeks J, Bunkoczi G, Jhoti H, Williams PA [Pubmed: 31877353] [DOI: 10.1016/j.drudis.2019.12.006] |
765.8 GB | 2.3 Å | |
2023-02-28 | Beta-galactosidase on EG-grid [3500 multi-frame micrographs composed of 40 frames each in TIFF format] | Fujita J, Makino F, Asahara H, Moriguchi M, Kumano S, Anzai I, Kishikawa J, Matsuura Y, Kato T, Namba K, Inoue T [Pubmed: 36755111] [DOI: 10.1038/s41598-023-29396-0] |
369.6 GB | 1.81 Å | |
2020-04-03 | BurrH bound to DNA Origami Goniometer [multiple data sets in MRC and MRCS formats] | Aksel T, Yu Z, Cheng Y, Douglas SM [Pubmed: 33077960] [DOI: 10.1038/s41587-020-0716-8] |
1.3 TB | 6.5 Å | |
2023-01-03 | C-terminal half of LRRK2 (I2020T) bound to microtubule in presence of MLi-2 kinase inhibitor [2354 multi-frame micrographs composed of 55 frames each in TIFF format] | Matyszewski M, Leschziner AE [Pubmed: 36510024] [DOI: 10.1038/s41594-022-00863-y] |
684.8 GB | 4.5 - 18.0 Å | |
2023-01-03 | C-terminal half of Leucine Rich Repeat Kinase 1 (LRRK1) [3629 multi-frame micrographs composed of 50 frames each in TIFF format] | Matyszewski M, Leschziner AE [Pubmed: 36510024] [DOI: 10.1038/s41594-022-00863-y] |
1.2 TB | 5.8 Å | |
2022-07-12 | C2-symmetric single-particle cryo-EM map of T. vaginalis FDPF3 - unaligned multi-frame micrographs [stack of 7398 particles in TIFF format] | Bell TA [Pubmed: 35780837] [DOI: 10.1016/j.jbc.2022.102210] |
1.4 TB | 6.6 - 6.8 Å | |
2020-12-09 | CARD8-CT filament [1208 multi-frame micrographs composed of 50 frames each in TIFF format] | Robert Hollingsworth L, David L, Li Y, Sharif H, Fontana P, Fu TM, Wu H [Pubmed: 33420033] [DOI: 10.1038/s41467-020-20320-y] |
1.2 TB | 3.54 Å | |
2022-05-10 | CEM-MitoLab: a dataset of ~22K cellular EM 2D images with label maps of ~135K mitochondrial instances, for deep learning [43720 micrographs in TIFF format] | Narayan K, Conrad RW | 2.8 GB | — | |
2022-05-20 | CEM1.5M : a cellular EM dataset containing ~1.5 x 106 unlabeled 2D image patches curated for deep learning [1592753 micrographs in TIFF format] | Narayan K | 57.6 GB | — |