오사카 대학의 EMPIAR-PDBj 팀은, 아시아의 EM 연구자가 용량이 큰 EM 이미지를 EMPIAR 데이터베이스에 전송하는 것을 돕고 있습니다. 인터넷을 통하여 EBI (UK)에 직>접 데이터를 전송하는 대신, 이용자는 우편이나 택배를 통하여 하드 디스크를 오사카 대학으로 보내실 수 있습니다. 혹은 인터넷을 이용하여 오사카 대학의 서버로 전>송 하실 수 있습니다. 오사카 대학에 데이터 전송 서비스를 희망하시는 분은 데이터를 보내시기 전에 먼저 이메일 통하여 등록하시고 싶은 EM데이터에 관하여 상담하십시오.
Release date | Imageset | Title | Authors and references | Size | Resolution |
---|---|---|---|---|---|
2021-10-05 | Cryo-EM structures of E. coli cytochrome bo3 in MSP Nanodiscs [3446 multi-frame micrographs composed of 50 frames each in TIFF format] | Vallese F [Pubmed: 34417297] [DOI: 10.1073/pnas.2106750118] |
851.4 GB | 2.19 Å | |
2020-11-27 | CryoEM SPA of Holo-SrpI Encapsulin Complex (Raw Frames) [1023 multi-frame micrographs composed of 33 frames each in TIFF format] | Nichols RJ, LaFrance BJ, Phillips NR, Oltrogge LM, Valentin-Alvarado LE, Bischoff AJ, Nogales E, Savage DF [Pubmed: 33821786] [DOI: 10.7554/eLife.59288] |
390.3 GB | 2.2 Å | |
2016-04-15 | 2.2 A resolution cryo-EM structure of beta-galactosidase in complex with a cell-permeant inhibitor [multiple data sets in MRC format] | Bartesaghi A, Merk A, Banerjee S, Matthies D, Wu X, Milne JL, Subramaniam S [Pubmed: 25953817] [DOI: 10.1126/science.aab1576] |
631.2 GB | 2.2 Å | |
2016-11-10 | Volta phase plate with defocus cryo-EM dataset of Thermoplasma acidophilum 20S proteasome [427 multi-frame micrographs composed of 24 frames each in TIFF format] | Danev R, Tegunov D, Baumeister W [Pubmed: 28109158] [DOI: 10.1101/085530] |
92.5 GB | 2.2 - 2.4 Å | |
2022-11-11 | Single particle cryo-EM dataset of sarkosyl-insoluble fraction from the cingulate cortex of an individual with Parkinson's disease dementia -synuclein filaments [10874 multi-frame micrographs composed of 42 frames each in TIFF format] | Yang Y, Shi Y, Schweighauser M, Zhang X, Kotecha A, Murzin AG, Garringer HJ, Cullinane PW, Saito Y, Foroud T, Warner TT, Hasegawa K, Vidal R, Murayama S, Revesz T, Ghetti B, Hasegawa M, Lashley T, Scheres SHW, Goedert M [Pubmed: 36108674] [DOI: 10.1038/s41586-022-05319-3] |
1.2 TB | 2.2 Å | |
2021-03-12 | Beta-galactosidase in complex with PETG [562 multi-frame micrographs composed of 75 frames each in TIFF format] | Saur M, Hartshorn MJ, Dong J, Reeks J, Bunkoczi G, Jhoti H, Williams PA [Pubmed: 31877353] [DOI: 10.1016/j.drudis.2019.12.006] |
720.1 GB | 2.2 Å | |
2024-04-17 | CryoEM movies of IAPP-S20G timecourse (22 week, FT14) [4373 multi-frame micrographs composed of 40 frames each in TIFF format] | Wilkinson M, Xu Y, Thacker D, Taylor AIP, Fisher DG, Gallardo RU, Radford SE, Ranson NA [Pubmed: 38134875] [DOI: 10.1016/j.cell.2023.11.025] |
602.0 GB | 2.2 - 3.1 Å | |
2023-02-14 | Microbacterium phage Oxtober96 [10437 multi-frame micrographs composed of 30 frames each in TIFF format] | Podgorski JM [Pubmed: 36649709] [DOI: 10.1016/j.str.2022.12.012] |
2.7 TB | 2.2 Å | |
2024-03-25 | Cryo electron microscopy of quinol-dependent Nitric Oxide Reductase (qNOR) from Alcaligenes xylosoxidans [5466 multi-frame micrographs composed of 43 frames each in EER format] | Flynn AJ, Antonyuk SV, Eady RR, Muench SP, Hasnain SS [Pubmed: 37296134] [DOI: 10.1038/s41467-023-39140-x] |
738.4 GB | 2.2 Å | |
2021-05-25 | structure of potato virus X, the prototype of the Alphaflexiviridae family [3024 multi-frame micrographs composed of 40 frames each in MRC format] | Grinzato A, Kandiah E, Zanotti G [Pubmed: 32203412] [DOI: 10.1038/s41589-020-0502-4] |
6.6 TB | 2.2 Å | |
2022-11-14 | Cryo-EM structure of streptavidin on ultraflat graphene film [2371 multi-frame micrographs composed of 32 frames each in MRCS format] | Zheng LM, Liu N, Wang HW, Peng HL | 685.7 GB | 2.2 Å | |
2023-08-18 | Initiation complex consisting of E. coli 70S ribosome with Am6AA mRNA codon in the A-site incubated with a ternary complex containing cognate acylated tRNA(Lys) [7172 multi-frame micrographs composed of 40 frames each in TIFF format] | Koziej L, Glatt S [Pubmed: 37553384] [DOI: 10.1038/s41467-023-40422-7] |
2.7 TB | 2.21 - 2.81 Å | |
2023-04-13 | Cryo-EM structure of the SARS-CoV-2 HR1HR2 fusion core complex with extended HR2 [18846 multi-frame micrographs composed of 40 frames each in TIFF format] | Yang K, Brunger AT [Pubmed: 36122200] [DOI: 10.1073/pnas.2210990119] |
4.6 TB | 2.22 Å | |
2021-03-29 | Multiple Genomic RNA-Coat Protein Contacts Play Vital Roles in the Assembly of Infectious Enterovirus-E [multiple data sets in MRC and MRCS formats] | Chandler-Bostock R, Mata CP, Bingham RJ, Dykeman EC, Meng B, Tuthill TJ, Rowlands DJ, Ranson NA, Twarock R, Stockley PG [Pubmed: 33370422] [DOI: 10.1371/journal.ppat.1009146] |
635.4 GB | 2.23 Å | |
2023-06-29 | E. coli 50S ribosome bound to compound streptogramin analog SAB001 [multiple data sets in TIFF and MRC formats] | Pellegrino J, Fraser JS, Lee DJ, Seiple IB | 1.6 TB | 2.23 Å | |
2023-06-29 | E. coli 50S ribosome bound to L-linker solithromycin conjugate [multiple data sets in MRC and TIFF formats] | Seiple IB, Pellegrino J, Fraser JS, Lee DJ | 835.4 GB | 2.25 Å | |
2023-09-22 | Short and capped F-actin raw data from Structures of the free and capped ends of the actin filament [multiple data sets in TIFF format] | Carman PJ, Barrie KR, Rebowski G, Dominguez R [Pubmed: 37228182] [DOI: 10.1126/science.adg6812] |
7.4 TB | 2.26 - 3.26 Å | |
2023-12-04 | Single particle cryo-EM dataset of homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum following reaction with the 2-oxoglutarate analogue succinyl phosphonate [16647 multi-frame micrographs composed of 60 frames each in TIFF format] | Yang L, Mechaly A, Bellinzoni M [Pubmed: 37563123] [DOI: 10.1038/s41467-023-40253-6] |
6.2 TB | 2.26 Å | |
2023-06-29 | E. coli 50S ribosome bound to compound SAB002 [multiple data sets in MRC and TIFF formats] | Pellegrino J, Seiple IB, Fraser JS, Lee DJ | 2.4 TB | 2.27 Å | |
2023-06-30 | E. coli 50S ribosome bound to SLC30 [multiple data sets in MRC and TIFF formats] | Seiple IB, Pellegrino J, Fraser JS, Lee DJ | 2.6 TB | 2.27 Å | |
2022-01-28 | Anaplastic lymphoma kinase (ALK) extracellular fragment of ligand binding region 648-1025 in complex with AUG-alpha [multiple data sets in TIFF and MRC formats] | Reshetnyak AV, Myasnikov AG, Kalodimos CG [Pubmed: 34819673] [DOI: 10.1038/s41586-021-04140-8] |
10.2 TB | 2.27 Å | |
2023-01-10 | Cryo-EM raw image of Bovine retinal pigmented epithelium lysate [multiple data sets in TIFF format] | Zhang Z., Morgan C.E. [Pubmed: 36577381] [DOI: 10.1016/j.celrep.2022.111876] |
1.8 TB | 2.28 - 3.32 Å | |
2022-06-17 | E. coli 50S ribosome bound to compounds VM2 and VS1 [multiple data sets in TIFF and MRC formats] | Pellegrino J, Lee DJ, Fraser JS, Seiple IB | 1.3 TB | 2.29 Å | |
2023-06-30 | E. coli 50S ribosome bound to tiamulin and azithromycin [multiple data sets in MRC and TIFF formats] | Seiple IB, Pellegrino J, Fraser JS, Lee DJ | 734.4 GB | 2.29 Å | |
2023-12-04 | Single particle cryo-EM dataset of the complex between Corynebacterium glutamicum homohexameric 2-oxoglutarate dehydrogenase OdhA and the FHA-protein inhibitor OdhI [19443 multi-frame micrographs composed of 40 frames each in TIFF format] | Yang L, Mechaly A, Bellinzoni M [Pubmed: 37563123] [DOI: 10.1038/s41467-023-40253-6] |
6.6 TB | 2.29 Å |