Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
오사카 대학의 EMPIAR-PDBj 팀은, 아시아의 EM 연구자가 용량이 큰 EM 이미지를 EMPIAR 데이터베이스에 전송하는 것을 돕고 있습니다. 인터넷을 통하여 EBI (UK)에 직>접 데이터를 전송하는 대신, 이용자는 우편이나 택배를 통하여 하드 디스크를 오사카 대학으로 보내실 수 있습니다. 혹은 인터넷을 이용하여 오사카 대학의 서버로 전>송 하실 수 있습니다. 오사카 대학에 데이터 전송 서비스를 희망하시는 분은 데이터를 보내시기 전에 먼저 이메일 통하여 등록하시고 싶은 EM데이터에 관하여 상담하십시오.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2018-05-11 |  |
Benchmarking cryo-EM single particle analysis workflow [1626 multi-frame micrographs composed of 30 frames each in MRC format] | Kim LK, Rice WJ, Eng ET, Kopylov M, Cheng A, Raczkowski AM, Jordan KJ, Bobe D, Potter CS, Carragher B [Pubmed: 29951483] [DOI: 10.3389/fmolb.2018.00050] |
345.0 GB | 3.0 - 4.6 Å |
| 2018-05-04 |  |
Benchmarking cryo-EM single particle analysis workflow [699 multi-frame micrographs composed of 33 frames each in MRC format] | Kim LK, Rice WJ, Eng ET, Kopylov M, Cheng A, Raczkowski AR, Jordan KD, Bobe D, Potter CS, Carragher B [Pubmed: 29951483] [DOI: 10.3389/fmolb.2018.00050] |
37.3 GB | 2.5 - 2.8 Å |
| 2018-06-13 |  |
Benchmarking cryo-EM single particle analysis workflow [1614 multi-frame micrographs composed of 30 frames each in MRC format] | Kim LY, Rice WJ, Eng ET, Kopylov M, Cheng A, Raczkowski AM, Jordan KD, Bobe D, Potter CS, Carragher B [Pubmed: 29951483] [DOI: 10.3389/fmolb.2018.00050] |
85.6 GB | 2.4 - 2.8 Å |
| 2019-05-08 |  |
Integrative structure and functional anatomy of a nuclear pore complex [multiple data sets in TIFF format] | Kim SJ, Fernandez-Martinez J, Nudelman I, Shi Y, Zhang W, Raveh B, Herricks T, Slaughter BD, Hogan JA, Upla P, Chemmama IE, Pellarin R, Echeverria I, Shivaraju M, Chaudhury AS, Wang J, Williams R, Unruh JR, Greenberg CH, Jacobs EY, Yu Z, de la Cruz MJ, Mironska R, Stokes DL, Aitchison JD, Jarrold MF, Gerton JL, Ludtke SJ, Akey CW, Chait BT, Sali A, Rout MP [Pubmed: 29539637] [DOI: 10.1038/nature26003] |
11.8 GB | 28.0 Å |
| 2023-07-25 |  |
Structure and dynamics of the essential endogenous mycobacterial polyketide synthase Pks13 [multiple data sets in TIFF and MRC formats] | Kim SK, Dickinson MS, Finer-Moore J, Stroud RM [Pubmed: 36782050] [DOI: 10.1038/s41594-022-00918-0] |
7.7 TB | 1.94 - 3.1 Å |
| 2021-11-16 |  |
Cryo-electron microscopy reconstruction of ATP-bound human P-glycoprotein [5986 multi-frame micrographs composed of 50 frames each in TIFF format] | Kim Y, Chen J [Pubmed: 29371429] [DOI: 10.1126/science.aar7389] |
2.0 TB | 3.4 Å |
| 2021-10-01 |  |
Training data set for automated 2D class selection [18051 class averages in MRCS format] | Kimanius D, Dong L, Sharov G, Nakane T, Scheres SHW [Pubmed: 34783343] [DOI: 10.1042/bcj20210708] |
20.7 GB | — |
| 2022-02-04 |  |
The pump-like chanelrhodopsin ChRmine [3528 multi-frame micrographs composed of 48 frames each in TIFF format] | Kishi KE, Kim YS, Fukuda M, Yamahita K [Pubmed: 35114111] [DOI: 10.1016/j.cell.2022.01.007] |
850.8 GB | 2.02 Å |
| 2022-10-10 |  |
Cryo-EM structure of Na+-pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae without inhibitors [9027 multi-frame micrographs composed of 59 frames each in TIFF format] | Kishikawa J, Ishikawa M, Masuya T, Murai M, Kitazumi Y, Butler NL, Kato T, Barquera B, Miyoshi H [Pubmed: 35882843] [DOI: 10.1038/s41467-022-31718-1] |
2.5 TB | 3.1 Å |
| 2021-01-13 |  |
Ribosome sample deposited using the chameleon (54 ms delay) [1569 multi-frame micrographs composed of 59 frames each in MRCS format] | Klebl DP, Gravett MSC, Kontziampasis D, Wright DJ, Bon RS, Monteiro DCF, Trebbin M, Sobott F, White HD, Darrow MC, Thompson RF, Muench SP [Pubmed: 32814033] [DOI: 10.1016/j.str.2020.07.018] |
2.8 TB | 7.1 Å |
| 2022-01-11 |  |
Cryo-FIB-SEM data on Chlamydomonas reinhardtii cells [37 micrographs in TIFF format] | Klumpe S [Pubmed: 34951584] [DOI: 10.7554/elife.70506] |
888.2 MB | — |
| 2022-01-12 |  |
Cryo-FIB-SEM volume in a Sum159 human cell line [20 micrographs in TIFF format] | Klumpe S, Fung HKH, Goetz SK, Zagoriy I, Hampoelz B, Zhang X, Erdmann PS, Baumbach J, Müller CW, Beck M, Plitzko JM, Mahamid J [Pubmed: 34951584] [DOI: 10.7554/elife.70506] |
120.1 MB | — |
| 2022-10-07 |  |
Endogenous ligand recognition and structural transition of a human PTH receptor. [multiple data sets in TIFF format] | Kobayashi K, Kawakami K, Kusakizako T, Miyauchi H, Tomita A, Kobayashi K, Shihoya W, Yamashita K, Nishizawa T, Kato HE, Inoue A, Nureki O [Pubmed: 35932760] [DOI: 10.1016/j.molcel.2022.07.003] |
3.8 TB | 2.8 - 4.1 Å |
| 2020-04-03 |  |
Cryo-EM structure of the human PAC1 receptor coupled to an engineered heterotrimeric G protein [2895 multi-frame micrographs composed of 64 frames each in TIFF format] | Kobayashi K, Shihoya W, Nishizawa T, Kadji FMN, Aoki J, Inoue A, Nureki O [Pubmed: 32157248] [DOI: 10.1038/s41594-020-0386-8] |
3.5 TB | 3.9 Å |
| 2025-02-03 |  |
Cryo-EM structures of human vitamin C transporter SVCT1 [multiple data sets in TIFF format] | Kobayashi TA, Shimada H, Sano FK, Itoh Y, Enoki S, Okada Y, Kusakizako T, Nureki O [Pubmed: 38956111] [DOI: 10.1038/s41467-024-49899-2] |
2.9 TB | 2.49 - 3.5 Å |
| 2025-03-17 |  |
Cryo electron structure of the ectodomain of SPRING bound to the ectodomain of Site-one protease [4886 multi-frame micrographs composed of 50 frames each in TIFF format] | Kober DL [Pubmed: 38977690] [DOI: 10.1038/s41467-024-50068-8] |
2.9 TB | 2.3 Å |
| 2025-02-10 |  |
Cryo electron structure of the ectodomain of Site-one protease without SPRING [6171 multi-frame micrographs composed of 1 frames each in EER format] | Kober DL [Pubmed: 38977690] [DOI: 10.1038/s41467-024-50068-8] |
3.1 TB | 2.27 Å |
| 2025-02-03 |  |
Micrographs for EMD-45727, EMD-45667, EMD-45669, and EMD-45670: Structure of DosP-FLAG-R97A with c-di-GMP [9450 multi-frame micrographs composed of 55 frames each in EER format] | Kober DL, Kumar P [Pubmed: 39511182] [DOI: 10.1038/s41467-024-53942-7] |
4.3 TB | 3.1 Å |
| 2025-02-04 |  |
Micrographs for EMD-44524 and EMD-44646: Structures of DosP R97A without c-di-GMP [7192 multi-frame micrographs composed of 50 frames each in TIFF format] | Kober DL, Kumar P [Pubmed: 39511182] [DOI: 10.1038/s41467-024-53942-7] |
4.2 TB | 3.65 Å |
| 2024-06-12 |  |
1.6Å Apoferritin from 200kV Glacios with Selectris Falcon 4 [4984 multi-frame micrographs composed of 371 frames each in EER format] | Koh A, Khavnekar S, Yang W, Karia D, Cats D, van der Ploeg R, Grollios F, Raschdorf O, Kotecha A, Němeček D [Pubmed: 35377368] [DOI: 10.3791/63519] |
754.4 GB | 1.635 Å |
| 2014-11-06 |  |
Yeast 80S Ribosome-Taura Syndrome Virus IRES complex, Frealign Input Particle Stack [stack of 416312 particles in MRC format] | Koh CS, Brilot AF, Grigorieff N, Korostelev AA [Pubmed: 24927574] [DOI: 10.1073/pnas.1406335111] |
273.6 GB | 6.1 Å |
| 2022-03-14 |  |
2.1Å T20S Proteosome from 200kV Glacios with Selectris Falcon 4 [4075 multi-frame micrographs composed of 854 frames each in EER format] | Koh FA, Khavnekar K, Kotecha A [Pubmed: 35377368] [DOI: 10.3791/63519] |
1.5 TB | 2.1 Å |
| 2024-09-06 |  |
cryo electron microscopy unaligned movie frames for single particle analysis of the Escherichia coli 70S ribosome with Paenilamicin B2 [7638 multi-frame micrographs composed of 1050 frames each in EER format] | Koller TO, Berger MJ, Morici M, Beckert B [Pubmed: 38826346] [DOI: 10.1101/2024.05.21.595107] |
4.3 TB | 2.2 - 2.4 Å |
| 2023-05-16 |  |
Cryo-Electron microscopy of the antimicrobial peptide Drosocin from Drosophila melanogaster bound to the E.coli 70S ribosome. [8861 multi-frame micrographs composed of 1532 frames each in EER format] | Koller TO, Morici M, Berger M, Safdari HA, Beckert B, Wilson DN [Pubmed: 36997646] [DOI: 10.1038/s41589-023-01293-7] |
7.9 TB | 2.1 - 2.8 Å |
| 2024-06-13 |  |
Cryo electron microscopy unaligned movie frames for single particle analysis of the Escherichia coli 70S ribosome with Myxovalargin A [8208 multi-frame micrographs composed of 40 frames each in TIFF format] | Koller TO, Wilson DN [Pubmed: 36603206] [DOI: 10.1021/jacs.2c08816] |
946.3 GB | 2.1 - 3.0 Å |
