Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2023-02-28 |  |
GAPDH on EG-grid [270 multi-frame micrographs composed of 40 frames each in TIFF format] | Fujita J, Makino F, Asahara H, Moriguchi M, Kumano S, Anzai I, Kishikawa J, Matsuura Y, Kato T, Namba K, Inoue T [Pubmed: 36755111] [DOI: 10.1038/s41598-023-29396-0] |
47.4 GB | 2.16 Å |
| 2015-01-16 |  |
Tobacco Mosaic Virus Falcon II dataset including manually boxed helix coordinates [109 multi-frame micrographs composed of 7 frames each in MRC format] | Fromm SA, Bharat TAM, Jakobi AJ, Hagen WJH, Sachse C [Pubmed: 25528571] [DOI: 10.1016/j.jsb.2014.12.002] |
47.7 GB | 3.35 - 4.2 Å |
| 2022-01-21 |  |
Cryo-EM reveals the stochastic nature of individual ATP binding events in a group II chaperonin [stack of 165212 particles in MRCS format] | Zhao Y, Schmid MF, Frydman J, Chiu W [Pubmed: 34362932] [DOI: 10.1038/s41467-021-25099-0] |
48.4 GB | 3.9 - 6.4 Å |
| 2020-02-18 |  |
Cryo-EM structure of an undocked innexin-6 hemichannel in phospholipids [933 micrographs in MRC format] | Burendei B, Shinozaki R, Watanabe M, Terada T, Tani K, Fujiyoshi Y, Oshima A [Pubmed: 32095518] [DOI: 10.1126/sciadv.aax3157] |
49.5 GB | 3.8 Å |
| 2016-03-16 |  |
Volta phase plate in-focus dataset of T20S proteasome [158 multi-frame micrographs composed of 12 frames each in MRC format] | Danev R, Baumeister W [Pubmed: 26949259] [DOI: 10.7554/eLife.13046] |
50.3 GB | 3.2 Å |
| 2016-12-02 |  |
CryoEM Dataset of L17-Depleted 50S Ribosomal Intermediates [stack of 131899 particles in MRC format] | Davis JH, Tan YZ, Carragher B, Potter CS, Lyumkis D, Williamson JR [Pubmed: 27912064] [DOI: 10.1016/j.cell.2016.11.020] |
50.3 GB | 3.7 - 7.9 Å |
| 2020-04-17 |  |
Cryo micrographs of microtubules (GDP state) decorated with NDC-NDC chimera of human doublecortin [950 multi-frame micrographs composed of 32 frames each in MRC format] | Cook AD, Manka SW, Wang S, Moores CA, Atherton J [Pubmed: 31610239] [DOI: 10.1016/j.jsb.2019.10.004] |
50.4 GB | 4.5 Å |
| 2021-04-14 |  |
Micro X ray tomography of mesoscopic placental tissue [multiple data sets in TIFF and BIG DATA VIEWER HDF5 formats] | Tun WM, Poologasundarampillai G, Bischof H, Nye G, King ONF, Basham M, Tokudome Y, Lewis RM, Johnstone ED, Brownbill P, Darrow M, Chernyavsky IL | 50.5 GB | — |
| 2018-07-06 |  |
Single particle cryoEM of hemagglutinin with spot-to-plunge time of 500ms [multiple data sets in MRC format] | Noble AJ, Wei H, Dandey VP, Zhang Z, Potter CS, Carragher B [Pubmed: 30250056] [DOI: 10.1038/s41592-018-0139-3] |
51.1 GB | — |
| 2017-07-14 |  |
Tilt-series for the electron cryotomogram of Vibrio cholerae O395 N1 [16 tilt series in MRC format] | Chang YW, Kjaer A, Ortega DR, Kovacikova G, Sutherland JA, Rettberg LA, Taylor RK, Jensen GJ [Pubmed: 28165453] [DOI: 10.1038/nmicrobiol.2016.269] |
51.3 GB | 50.0 Å |
| 2024-03-20 |  |
Directed evolution of and structural insights into antibody-mediated disruption of a stable receptor-ligand complex [592 micrographs in MRC format] | Pennington LF, Gasser P, Kleinboelting S, Zhang C, Skiniotis G, Eggel A, Jardetzky TS [Pubmed: 34862384] [DOI: 10.1038/s41467-021-27397-z] |
52.0 GB | 7.29 Å |
| 2022-07-26 |  |
In situ cryo-electron tomography of E. coli APEC 2248 infected by Goslar [1073 tilt series in TIFF format] | Laughlin TG, Deep A, Prichard AM, Seitz C, Gu Y, Enustun E, Suslov S, Khanna K, Birkholz EA, Armbruster E, McCammon JA, Amaro RE, Pogliano J, Corbett KD, Villa E [Pubmed: 35922510] [DOI: 10.1038/s41586-022-05013-4] |
52.2 GB | 8.53 - 27.0 Å |
| 2021-07-23 |  |
Tilt-series taken from SARS-CoV-2 infected Vero cells. [multiple data sets in MRC format] | Mendonça L, Howe A, Gilchrist JB, Sheng Y, Sun D, Knight ML, Zanetti-Domingues LC, Bateman B, Krebs AS, Chen L, Radecke J, Li VD, Ni T, Kounatidis I, Koronfel MA, Szynkiewicz M, Harkiolaki M, Martin-Fernandez ML, James W, Zhang P [Pubmed: 34330917] [DOI: 10.1038/s41467-021-24887-y] |
52.7 GB | 10.6 - 16.0 Å |
| 2022-11-25 |  |
Cryo-EM dataset of P.berghei kinesin-8B motor domain in AMPPNP state bound to tubulin dimer [1026 micrographs in MRC format] | Liu T, Shilliday F, Cook AD, Moores CA [Pubmed: 36384964] [DOI: 10.1038/s41467-022-34710-x] |
54.4 GB | 3.3 Å |
| 2020-07-24 |  |
Human delta protocadherin 10 full ectodomains on membranes, tomogram 3 [1 tilt series in MRC format] | Harrison OJ, Brasch J, Katsamba PS, Ahlsen G, Noble AJ, Dan H, Sampogna R, Potter CS, Carragher B, Honig B, Shapiro L [Pubmed: 32101743] [DOI: 10.1016/j.celrep.2020.02.003] |
55.1 GB | — |
| 2023-10-13 |  |
SBF-SEM micrographs of A. algerae microsporidia spores, 45 min germination [300 micrographs in TIFF format] | Davydov A, Jaroenlak P, Ekiert D, Bhabha G [DOI: 10.7554/eLife.86638.1] |
55.9 GB | — |
| 2022-12-13 |  |
Focused ion beam-scanning electron microscopy links pathological myelin outfoldings to axonal changes in mice lacking Plp1 or Mag [1556 micrographs in TIFF format] | Steyer AM, Möbius W [Pubmed: 36354016] [DOI: 10.1002/glia.24290] |
56.4 GB | — |
| 2022-05-20 |  |
CEM1.5M : a cellular EM dataset containing ~1.5 x 106 unlabeled 2D image patches curated for deep learning [1592753 micrographs in TIFF format] | Narayan K | 57.6 GB | — |
| 2021-10-19 |  |
Molecular structure and conformation of stereocilia tip-links elucidated by cryo-electron tomography [multiple data sets in MRC format] | Elferich J, Clark S, Ge J, Goehring A, Matsui A, Gouaux E [Pubmed: 34964715] [DOI: 10.7554/eLife.74512] |
58.5 GB | — |
| 2021-04-06 |  |
Human 46QHuntingtin-HAP40 complex structure [1115 micrographs in MRC format] | GUO Q [Pubmed: 33909994] [DOI: 10.1016/j.str.2021.04.003] |
59.2 GB | 3.6 Å |
| 2020-12-04 |  |
Cryo-EM motion corrected micrographs of rabbit muscle aldolase [1118 micrographs in MRC format] | Li Y., Cash J.N., Tesmer J.J.G., Cianfrocco M.A. [Pubmed: 32294468] [DOI: 10.1016/j.str.2020.03.008] |
59.3 GB | 3.2 Å |
| 2017-11-28 |  |
FIB-SEM of a dividing cell at 5.7 min after anaphase onset [2620 multi-frame micrographs composed of 1 frames each in TIFF format] | Otsuka S, Steyer AM, Schorb M, Hériché JK, Hossain MJ, Sethi S, Kueblbeck M, Schwab Y, Beck M, Ellenberg J [Pubmed: 29323269] [DOI: 10.1038/s41594-017-0001-9] |
63.0 GB | — |
| 2018-01-25 |  |
Volta phase plate data collection facilitates image processing and cryo-EM structure determination [318 multi-frame micrographs composed of 30 frames each in TIFF format] | von Loeffelholz O, Klaholz BP [Pubmed: 29337113] [DOI: 10.1016/j.jsb.2018.01.003] |
64.0 GB | 3.9 Å |
| 2015-11-24 |  |
Cryo-EM Structures of Synaptic RAG1-RAG2 Complex [multiple data sets in MRC format] | Heng R, Chambers MG, Fu T, Tong AB, Liao M, Wu H [Pubmed: 26548953] [DOI: 10.1016/j.cell.2015.10.055] |
65.9 GB | 3.4 Å |
| 2017-02-09 |  |
Structure of the human HCN1 hyperpolarization-activated cyclic nucleotide-gated ion channel [multiple data sets in MRC format] | Lee CH, MacKinnon R [Pubmed: 28086084] [DOI: 10.1016/j.cell.2016.12.023] |
66.5 GB | 3.5 Å |
