Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2020-09-02 |  |
CryoEM reconstruction of ESCRT-III filament composed of IST1 NTD R16E K27E double mutant [stack of 4556 particles in MRCS format] | Nguyen HC, Talledge N, McCullough J, Sharma A, Moss FR, Iwasa JH, Vershinin MD, Sundquist WI, Frost A [Pubmed: 32251413] [DOI: 10.1038/s41594-020-0404-x] |
1.7 GB | 7.2 Å |
| 2016-09-22 |  |
Cryo-EM structure of the yeast U4/U6.U5 tri-snRNP at 3.7 Angstrom (particle images) [stack of 473827 particles in MRC format] | Nguyen TH, Galej WP, Bai XC, Oubridge C, Newman AJ, Scheres SH, Nagai K [Pubmed: 26829225] [DOI: 10.1038/nature16940] |
75.2 GB | 3.7 Å |
| 2022-10-07 |  |
SARS-CoV-2 S Omicron Spike B.1.1.529 [multiple data sets in MRC and EER formats] | Ni D, Lau K, Turelli P, Beckert B, Nazarov S, Pojer F, Myasnikov A, Stahlberg H, Trono D [DOI: 10.1101/2021.12.27.474250] |
8.2 TB | 3.02 Å |
| 2023-03-30 |  |
human ACE2 receptor bound to SARS-CoV-2 variant Omicron BA.4/5 Spike [7254 multi-frame micrographs composed of 1092 frames each in EER format] | Ni D, Myasnikov A, Stahlberg S, Lau K [DOI: 10.1371/journal.ppat.1011206] |
4.1 TB | 2.92 Å |
| 2023-03-30 |  |
mouse ACE2 receptor bound to SARS-CoV-2 variant Omicron BA.4/5 Spike [7989 multi-frame micrographs composed of 1092 frames each in EER format] | Ni D, Myasnikov A, Stahlberg S, Lau K [DOI: 10.1371/journal.ppat.1011206] |
4.4 TB | 2.92 - 3.3 Å |
| 2023-03-13 |  |
mouse ACE2 receptor bound to SARS-CoV-2 variant Omicron BA.1 Spike [20892 multi-frame micrographs composed of 1568 frames each in EER format] | Ni D, Myasnikov A, Stahlberg S, Lau K [DOI: 10.1371/journal.ppat.1011206] |
10.6 TB | 3.03 - 3.22 Å |
| 2023-03-27 |  |
mouse ACE2 receptor bound to SARS-CoV-2 variant Omicron BA.2.12.1 Spike [8046 multi-frame micrographs composed of 945 frames each in EER format] | Ni D, Myasnikov A, Stahlberg S, Lau K [DOI: 10.1371/journal.ppat.1011206] |
4.0 TB | 2.89 - 3.03 Å |
| 2023-03-27 |  |
mouse ACE2 receptor bound to SARS-CoV-2 variant Beta Spike [5671 multi-frame micrographs composed of 40 frames each in MRC format] | Ni D, Myasnikov A, Stahlberg S, Lau K [DOI: 10.1371/journal.ppat.1011206] |
3.8 TB | 4.4 Å |
| 2021-09-10 |  |
cryo electron tomography of Apoferritin [6 tilt series in TIFF format] | Ni T, Frosio T, Mendonça L, Sheng Y, Clare D, Himes BA, Zhang P [Pubmed: 35022621] [DOI: 10.1038/s41596-021-00648-5] |
17.3 GB | 2.86 Å |
| 2021-04-23 |  |
Cryo-electron tomography of HIV-1 GagdeltaMASP1T8I assemblies [5 tilt series in MRC format] | Ni T, Frosio T, Mendonça L, Sheng Y, Clare D, Himes BA, Zhang P [Pubmed: 35022621] [DOI: 10.1038/s41596-021-00648-5] |
25.6 GB | 4.5 Å |
| 2023-09-22 |  |
Carboxysome minishell containing CsoS1A4A and CsoS2 [20277 multi-frame micrographs composed of 50 frames each in TIFF format] | Ni T, Jiang Q, Ng PC, Dou H, Liu LN, Zhang P [Pubmed: 37679318] [DOI: 10.1038/s41467-023-41211-y] |
6.9 TB | 1.86 - 2.52 Å |
| 2023-09-22 |  |
Carboxysome minishell containing CsoS1A4A and truncated CsoS2 [13151 multi-frame micrographs composed of 40 frames each in TIFF format] | Ni T, Jiang Q, Ng PC, Dou H, Liu LN, Zhang P [Pubmed: 37679318] [DOI: 10.1038/s41467-023-41211-y] |
2.2 TB | 2.02 - 3.29 Å |
| 2023-04-26 |  |
Cryo-electron tomography of ChAdOx spikes HexaPro mutant [68 tilt series in MRC format] | Ni T, Mendonca L, Zhu Y, Howe A, Radecke J, Sheng Y, Krebs AS, Shah P, Allen E, Spencer A, Morris S, Stuart D, Gilbert S, Zhang P | 240.3 GB | 9.0 - 10.6 Å |
| 2023-04-26 |  |
Cryo-electron tomography of ChAdOx spikes (AZD2816) [142 tilt series in MRC format] | Ni T, Mendonca L, Zhu Y, Howe A, Radecke J, Sheng Y, Krebs AS, Shah P, Allen E, Spencer A, Morris S, Stuart D, Gilbert S, Zhang P | 494.4 GB | 9.6 - 11.9 Å |
| 2020-11-27 |  |
CryoEM SPA of Holo-SrpI Encapsulin Complex (Raw Frames) [1023 multi-frame micrographs composed of 33 frames each in TIFF format] | Nichols RJ, LaFrance BJ, Phillips NR, Oltrogge LM, Valentin-Alvarado LE, Bischoff AJ, Nogales E, Savage DF [Pubmed: 33821786] [DOI: 10.7554/eLife.59288] |
390.3 GB | 2.2 Å |
| 2021-03-24 |  |
CryoEM SPA of Apo-SrpI Encapsulin Complex (Raw Frames) [2967 multi-frame micrographs composed of 39 frames each in TIFF format] | Nichols RJ, LaFrance BJ, Phillips NR, Oltrogge LM, Valentin-Alvarado LE, Bischoff AJ, Nogales E, Savage DF [Pubmed: 33821786] [DOI: 10.7554/eLife.59288] |
1.6 TB | 2.9 Å |
| 2020-11-24 |  |
Motion-corrected micrographs and extracted particle images of the 70S ribosome from the human pathogen Acinetobacter baumannii in complex with amikacin [multiple data sets in MRC and MRCS formats] | Nicholson D, Edwards TA, O'Neill AJ, Ranson NA [Pubmed: 32857965] [DOI: 10.1016/j.str.2020.08.004] |
177.7 GB | 2.7 - 3.0 Å |
| 2020-11-24 |  |
Motion-corrected micrographs and extracted particle images of the 70S ribosome from the human pathogen Acinetobacter baumannii in complex with tigecycline [multiple data sets in MRC and MRCS formats] | Nicholson D, Edwards TA, O'Neill AJ, Ranson NA [Pubmed: 32857965] [DOI: 10.1016/j.str.2020.08.004] |
538.5 GB | 2.5 - 3.0 Å |
| 2021-02-12 |  |
Ultra-high voltage electron microscope tomography tilt series of neurite section [1 tilt series in MRC format] | Nishida T, Yoshimura R, Nishi R, Imoto Y, Endo Y [Pubmed: 32133640] [DOI: 10.1111/jmi.12885] |
120.3 MB | — |
| 2021-02-12 |  |
Ultra-high voltage electron microscope tomography tilt series of 0.7-μm-thick neurite section acquired at 6,000× magnification at an accelerating voltage of 1 MV [1 tilt series in MRC format] | Nishida T, Yoshimura R, Nishi R, Imoto Y, Endo Y [Pubmed: 32133640] [DOI: 10.1111/jmi.12885] |
120.3 MB | — |
| 2021-02-12 |  |
Ultra-high voltage electron microscope tomography tilt series of 0.7-μm-thick neurite section acquired at 15,000× magnification at an accelerating voltage of 1 MV [1 tilt series in MRC format] | Nishida T, Yoshimura R, Nishi R, Imoto Y, Endo Y [Pubmed: 32133640] [DOI: 10.1111/jmi.12885] |
120.3 MB | — |
| 2020-05-27 |  |
Ultra-high voltage electron microscope tomography tilt series of 0.7-μm-thick neurite section acquired at 20,000× magnification at an accelerating voltage of 1 MV [1 tilt series in MRC format] | Nishida T, Yoshimura R, Nishi R, Imoto Y, Endo Y [Pubmed: 32133640] [DOI: 10.1111/jmi.12885] |
120.3 MB | — |
| 2015-10-01 |  |
Tubulin Chaperone complexes TBC-DEG Q73L: alpha beta-tubulin:TBCC complex [stack of 16801 particles in MRC format] | Nithianantham S, Le S, Seto E, Jia W, Leary J, Corbett KD, Moore JK, Al-Bassam J [Pubmed: 26208336] [DOI: 10.7554/eLife.08811] |
1.0 GB | 24.0 Å |
| 2015-10-01 |  |
Tubulin Chaperone complexes TBC-DEG Q73L: alpha beta-tubulin complex [stack of 18361 particles in MRC format] | Nithianantham S, Le S, Seto E, Jia W, Leary J, Corbett KD, Moore JK, Al-Bassam J [Pubmed: 26208336] [DOI: 10.7554/eLife.08811] |
1.1 GB | 24.0 Å |
| 2020-12-04 |  |
Single-particle Cryo-EM of the Thermococcus gammatolerans McrB AAA+ hexamer [1605 multi-frame micrographs composed of 40 frames each in TIFF format] | Niu Y, Suzuki H, Hosford CJ, Walz T, Chappie JS [Pubmed: 33219217] [DOI: 10.1038/s41467-020-19735-4] |
644.6 GB | 3.1 Å |
