Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2023-06-29 |  |
E. coli 50S ribosome bound to D-linker solithromycin conjugate [multiple data sets in TIFF and MRC formats] | Seiple IB, Pellegrino J, Fraser JS, Lee DJ | 1.2 TB | 2.35 Å |
| 2025-04-07 |  |
Dynamic microtubule plus end architecture in presence of EB3. [51 tilt series in TIFF format] | Saunders H.A.J., Van den Berg C.M., Hoogebeen R.A., Schweizer D., Stecker K.E., Roepman R., Howes S.C., Akhmanova A. [Pubmed: 39856351] [DOI: 10.1038/s41594-025-01483-y] |
75.9 GB | — |
| 2021-03-05 |  |
Dynabeads as Fiducials for SXT and SIM Correlation [700 tilt series in MRC format] | Okolo CA, Kounatidis I, Groen J, Nahas KL, Balint S, Fish T, Koronfel MA, López-Cortajarena A, Dobbie I, Pereiro E, Harkiolaki M | 1.2 GB | — |
| 2025-07-03 |  |
Dunaliella tertiolecta PSI-LHCI-TIDI1 supercomplex [22975 micrographs in MRC format] | Liu HW, Khera R, Iwai M, Merchant SS [Pubmed: 40523173] [DOI: 10.1073/pnas.2500621122] |
1.0 GB | 3.0 Å |
| 2025-07-03 |  |
Dunaliella tertiolecta PSI-LHCI supercomplex [10090 multi-frame micrographs composed of 50 frames each in TIFF format] | Liu HW, Khera R, Iwai M, Merchant SS [Pubmed: 40523173] [DOI: 10.1073/pnas.2500621122] |
209.0 MB | 2.1 Å |
| 2025-07-03 |  |
Dunaliella salina PSI-LHCI-TIDI1 supercomplex [12541 multi-frame micrographs composed of 50 frames each in TIFF format] | Liu HW, Khera R, Iwai M, Merchant SS [Pubmed: 40523173] [DOI: 10.1073/pnas.2500621122] |
262.0 MB | 3.0 Å |
| 2025-07-03 |  |
Dunaliella salina PSI-LHCI supercomplex [10743 multi-frame micrographs composed of 50 frames each in TIFF format] | Liu HW, Khera R, Iwai M, Merchant SS [Pubmed: 40523173] [DOI: 10.1073/pnas.2500621122] |
1.5 GB | 2.9 Å |
| 2021-10-18 |  |
Drug-free A. baumannii MsbA [6113 micrographs in MRC format] | Thélot FA, Liao M [Pubmed: 34554829] [DOI: 10.1126/science.abi9009] |
268.4 GB | 5.2 Å |
| 2023-06-23 |  |
Dose weighted tilt series of ESCPE-1 membrane coats [57 tilt series in MRC format] | Castaño-Díez D [Pubmed: 37322239] [DOI: 10.1038/s41594-023-01014-7] |
117.4 GB | 10.0 Å |
| 2023-01-16 |  |
Dog beta3 adrenergic receptor bound to mirabegron in complex with a miniGs heterotrimer [2864 multi-frame micrographs composed of 48 frames each in TIFF format] | Nagiri C, Kobayashi K, Tomita A, Kato M, Yamashita K, Nishizawa T, Inoue A, Shihoya W, Nureki O [Pubmed: 34314699] [DOI: 10.1016/j.molcel.2021.06.024] |
671.1 GB | 3.16 Å |
| 2021-06-04 |  |
Distinct mechanisms of the human mitoribosome recycling and antibiotic resistance [stack of 6649 particles in MRC format] | Keshavan P, Banavali NK [Pubmed: 34127662] [DOI: 10.1038/s41467-021-23726-4] |
2.3 TB | 3.15 - 3.49 Å |
| 2021-11-12 |  |
Disease variant M854K MDA5-dsRNA filaments in complex with ADP-AlF4 [2177 multi-frame micrographs composed of 60 frames each in TIFF format] | Yu Q, Modis Y [Pubmed: 34795277] [DOI: 10.1038/s41467-021-27062-5] |
2.5 TB | 4.26 - 4.3 Å |
| 2024-03-20 |  |
Directed evolution of and structural insights into antibody-mediated disruption of a stable receptor-ligand complex [592 micrographs in MRC format] | Pennington LF, Gasser P, Kleinboelting S, Zhang C, Skiniotis G, Eggel A, Jardetzky TS [Pubmed: 34862384] [DOI: 10.1038/s41467-021-27397-z] |
52.0 GB | 7.29 Å |
| 2021-09-22 |  |
Di nucleosome fraction from metaphase chromosome in Xenopus egg extract lot1 [1386 multi-frame micrographs composed of 50 frames each in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
825.4 GB | 8.1 Å |
| 2021-09-24 |  |
Di nucleosome fraction from interphase chromosome in Xenopus egg extract lot1 [1656 multi-frame micrographs composed of 50 frames each in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
805.9 GB | 4.74 Å |
| 2024-01-15 |  |
Developing retina in zebrafish 55 hpf larval eye. [16 reconstructed volumes in DM3 format] | Wilsch-Bräuninger M | 1.2 GB | — |
| 2023-04-11 |  |
Desulfonema ishimotonii Cas7-11 in complex with Csx29 and Csx30 [multiple data sets in TIFF format] | Strecker J, Demircioglu FE, Li D, Faure G, Wilkinson ME, Macrae RK, Zhang F [Pubmed: 36423276] [DOI: 10.1126/science.add7450] |
5.7 TB | 2.53 - 3.15 Å |
| 2016-06-28 |  |
Designer nanoscale DNA assemblies programmed from the top down [50 micrographs in MRC format] | Veneziano R, Ratanalert S, Zhang K, Zhang F, Yan H, Chiu W, Bathe M [Pubmed: 27229143] [DOI: 10.1126/science.aaf4388] |
3.7 GB | 22.0 Å |
| 2016-06-28 |  |
Designer nanoscale DNA assemblies programmed from the top down [177 micrographs in MRC format] | Veneziano R, Ratanalert S, Zhang K, Zhang F, Yan H, Chiu W, Bathe M [Pubmed: 27229143] [DOI: 10.1126/science.aaf4388] |
13.0 GB | 20.0 Å |
| 2016-06-28 |  |
Designer nanoscale DNA assemblies programmed from the top down [100 micrographs in MRC format] | Veneziano R, Ratanalert S, Zhang K, Zhang F, Yan H, Chiu W, Bathe M [Pubmed: 27229143] [DOI: 10.1126/science.aaf4388] |
7.3 GB | 25.0 Å |
| 2022-11-17 |  |
Defocus and Volta potential phase plate cryo-electron tomography of S. pombe cryo-FIB lamellae with comprehensive annotations of structures and macromolecules [multiple data sets in TIFF and MRC formats] | Goetz SK, Mahamid J [Pubmed: 36690741] [DOI: 10.1038/s41592-022-01746-2] |
305.5 GB | 9.3 - 34.0 Å |
| 2023-06-16 |  |
Defective HIV-1 capsid lattice assembled on 30-nm liposome scaffolds in the absence of assembly cofactor IP6 [696 multi-frame micrographs composed of 50 frames each in TIFF format] | Highland CMH, Dick RAD [Pubmed: 37094124] [DOI: 10.1073/pnas.2220545120] |
456.4 GB | 7.1 Å |
| 2025-03-19 |  |
Dataset of apoferritin on HexAuFoil grids [multiple data sets in TIFF format] | Weckener M, Naylor CE | 53.4 GB | — |
| 2024-04-17 |  |
Data set of tilted cryo-EM images of human N-deacetylase/N-sulfotransferase 1 [multiple data sets in TIFF format] | Vallet SD, Annaval T, Wild R, Lortat-Jacob H [DOI: 10.1002/pgr2.8] |
1.9 TB | 4.5 Å |
| 2022-06-27 |  |
DNA polymerase D temporarily connects primase to the CMG-like helicase before interacting with proliferating cell nuclear antigen [2378 multi-frame micrographs composed of 39 frames each in TIFF format] | Oki K, Yamagami T, Nagata M, Mayanagi K, Shirai T, Adachi N, Numata T, Ishino S, Ishino Y [Pubmed: 33849056] [DOI: 10.1093/nar/gkab243] |
1.7 TB | 7.1 Å |
