Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2022-10-10 |  |
Cryo-EM reveals the structural basis of long-range electron transport in a cytochrome-based bacterial nanowire [965 multi-frame micrographs composed of 45 frames each in TIFF format] | Strauss M [Pubmed: 31240257] [DOI: 10.1038/s42003-019-0448-9] |
256.6 GB | 3.4 Å |
| 2023-04-11 |  |
Desulfonema ishimotonii Cas7-11 in complex with Csx29 and Csx30 [multiple data sets in TIFF format] | Strecker J, Demircioglu FE, Li D, Faure G, Wilkinson ME, Macrae RK, Zhang F [Pubmed: 36423276] [DOI: 10.1126/science.add7450] |
5.7 TB | 2.53 - 3.15 Å |
| 2023-06-30 |  |
In situ X-ray assisted electron microscopy staining for large biological samples [33 multi-frame micrographs composed of 1 frames each in TIFF format] | Ströh S, Hammerschmith EW, Tank DW, Seung HS, Wanner AA [Pubmed: 36263931] [DOI: 10.7554/elife.72147] |
981.6 GB | — |
| 2019-05-02 |  |
Structure of the human PKD1-PKD2 complex [stack of 3774 particles in MRCS format] | Su Q [Pubmed: 30093605] [DOI: 10.1126/science.aat9819] |
209.8 GB | 3.6 Å |
| 2019-11-11 |  |
Structure of the green algal photosystem I supercomplex with a decameric light-harvesting complex I. [10989 multi-frame micrographs composed of 33 frames each in TIFF format] | Suga M, Ozawa S, Yoshida-Motomura K, Akita F, Miyazaki N, Takahashi Y [Pubmed: 31182847] [DOI: 10.1038/s41477-019-0438-4] |
8.0 TB | 2.8 - 2.9 Å |
| 2023-03-13 |  |
FIB-SEM images about Control/OPA1 KD NIH-3T3 cells [1984 multi-frame micrographs composed of 1 frames each in TIFF format] | Suga S, Nakamura K, Kawai H, Hirabayashi Y [DOI: 10.1101/2021.06.11.448083] |
46.8 GB | — |
| 2023-09-22 |  |
Cryo-EM particle stacks of the small dataset of ∆KsgA 30S plus KsgA sample [stack of 588015 particles in MRCS format] | Sun J, Kinman LF, Jahagirdar D, Ortega J, Davis JH [Pubmed: 37653244] [DOI: 10.1038/s41594-023-01078-5] |
320.1 GB | 2.8 Å |
| 2023-09-22 |  |
Cryo-EM particle stacks of the large dataset of ∆KsgA 30S plus KsgA sample [stack of 1821263 particles in MRCS format] | Sun J, Kinman LF, Jahagirdar D, Ortega J, Davis JH [Pubmed: 37653244] [DOI: 10.1038/s41594-023-01078-5] |
991.2 GB | 2.8 Å |
| 2023-09-22 |  |
Cryo-EM particle stacks of the ∆KsgA immature 30S sample [stack of 775859 particles in MRCS format] | Sun J, Kinman LF, Jahagirdar D, Ortega J, Davis JH [Pubmed: 37653244] [DOI: 10.1038/s41594-023-01078-5] |
422.2 GB | 3.3 Å |
| 2021-11-26 |  |
Cryo-EM reconstruction of heavy chain mouse apoferritin, 8 datasets testing dose rate and correlative double sampling mode for the Gatan K3 direct electron detector. [1143 multi-frame micrographs composed of 120 frames in LZW compressed TIFF format [multiple data sets in TIFF format] | Sun M, Azumaya CM, Tse E, Bulkley DP, Harrington MB, Gilbert G, Frost A, Southworth D, Verba KA, Cheng Y, Agard DA [Pubmed: 33984504] [DOI: 10.1016/j.jsb.2021.107745] |
8.5 TB | 1.655 Å |
| 2023-04-14 |  |
Structural insights into the human Prostaglandin E receptor EP3-Gi signaling complex [11241 multi-frame micrographs composed of 70 frames each in TIFF format] | Suno R, Sugita Y, Kobayashi T [Pubmed: 36103815] [DOI: 10.1016/j.celrep.2022.111323] |
3.1 TB | 3.375 Å |
| 2021-05-07 |  |
The cryo-EM structure of vesivirus 2117 highlights functional variations in entry pathways for viruses in different clades of the vesivirus genus. [2000 multi-frame micrographs composed of 50 frames each in MRC format] | Sutherland H, Conley MJ, Emmott E, Streetley J, Goodfellow IG, Bhella D [Pubmed: 33853966] [DOI: 10.1128/JVI.00282-21] |
24.4 TB | 3.65 Å |
| 2023-08-20 |  |
The J-K RNA fragment of encephalomyocarditis virus IRES in complex with eIF4G-HEAT1 and eIF4A [6194 multi-frame micrographs composed of 40 frames each in TIFF format] | Suzuki H, Fujiyoshi Y | 1018.5 GB | 3.76 Å |
| 2020-12-22 |  |
Single-particle Cryo-EM of the endogenous human BAF complex alone [4865 micrographs in MRC format] | Suzuki H, Mashtalir N, Kadoch C, Walz T [Pubmed: 33053319] [DOI: 10.1016/j.cell.2020.09.051] |
258.1 GB | 7.8 Å |
| 2023-10-03 |  |
Single-particle Cryo-EM datasets of hydroxycarboxylic acid receptor signaling complexes [multiple data sets in TIFF format] | Suzuki S, Suzuki H, Fujiyoshi Y [Pubmed: 37736747] [DOI: 10.1038/s41467-023-41650-7] |
4.6 TB | 2.85 - 3.11 Å |
| 2023-05-23 |  |
Archaeal DNA ligase and heterotrimeric PCNA with non-ligatable nicked DNA [3014 multi-frame micrographs composed of 37 frames each in TIFF format] | Sverzhinsky A, Pascal JM [Pubmed: 34838188] [DOI: 10.1016/j.str.2021.11.002] |
2.1 TB | 4.16 Å |
| 2023-05-26 |  |
Archaeal DNA ligase and heterotrimeric PCNA with ligatable nicked DNA [multiple data sets in TIFF format] | Sverzhinsky A, Pascal JM [Pubmed: 34838188] [DOI: 10.1016/j.str.2021.11.002] |
5.4 TB | 4.2 - 4.38 Å |
| 2014-11-06 |  |
Yeast 80S Ribosome - tRNA- Kozak mRNA complexes, Frealign Input Particle Stack [stack of 86866 particles in MRC format] | Svidritskiy E, Brilot AF, Koh CS, Grigorieff N, Korostelev AA [Pubmed: 25043550] [DOI: 10.1016/j.str.2014.06.003] |
42.0 GB | 6.2 - 6.3 Å |
| 2018-01-24 |  |
Tilt-series of e. coli carrying empty ple6 plasmid induced with 20 uM IPTG [4 tilt series in MRC format] | Swulius MT, Jensen GJ [Pubmed: 22904287] [DOI: 10.1128/JB.00505-12] |
3.8 GB | — |
| 2018-01-24 |  |
Tilt-series of e. coli carrying the ple7 plasmid carrying YFP-MreB induced with 20 uM IPTG [7 tilt series in MRC format] | Swulius MT, Jensen GJ [Pubmed: 22904287] [DOI: 10.1128/JB.00505-12] |
6.6 GB | — |
| 2018-01-24 |  |
Tilt-series of e. coli carrying the ple7 plasmid carrying YFP-MreB hyper-overexpressed by induction with 1uM IPTG [5 tilt series in MRC format] | Swulius MT, Jensen GJ [Pubmed: 22904287] [DOI: 10.1128/JB.00505-12] |
5.0 GB | — |
| 2020-08-11 |  |
Chicken CALHM1, 1 mM EDTA [10513 multi-frame micrographs composed of 50 frames each in TIFF format] | Syrjanen JL, Michalski K, Chou TH, Grant T, Rao S, Simorowski N, Tucker SJ, Grigorieff N, Furukawa H [Pubmed: 31988524] [DOI: 10.1038/s41594-019-0369-9] |
2.4 TB | 3.63 Å |
| 2020-08-11 |  |
Chicken CALHM1 - Human CALHM2 chimera [10927 multi-frame micrographs composed of 30 frames each in TIFF format] | Syrjanen JL, Michalski K, Chou TH, Grant T, Rao S, Simorowski N, Tucker SJ, Grigorieff N, Furukawa H [Pubmed: 31988524] [DOI: 10.1038/s41594-019-0369-9] |
1.1 TB | 3.87 Å |
| 2020-08-11 |  |
Human CALHM2 gap junction in nanodisc, 1 mM CaCl2 and 1 mM ATP [891 multi-frame micrographs composed of 50 frames each in TIFF format] | Syrjanen JL, Michalski K, Chou TH, Grant T, Rao S, Simorowski N, Tucker SJ, Grigorieff N, Furukawa H [Pubmed: 31988524] [DOI: 10.1038/s41594-019-0369-9] |
216.5 GB | 3.68 Å |
| 2020-08-11 |  |
Human CALHM2 in nanodisc, 1 mM EDTA [2328 multi-frame micrographs composed of 50 frames each in TIFF format] | Syrjanen JL, Michalski K, Chou TH, Grant T, Rao S, Simorowski N, Tucker SJ, Grigorieff N, Furukawa H [Pubmed: 31988524] [DOI: 10.1038/s41594-019-0369-9] |
604.3 GB | 3.68 Å |
