Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2022-06-21 |  |
Cryo-electron microscopy reconstruction of PCAT1 in three distinct inward-facing conformations during ATP turnover condition [11966 multi-frame micrographs composed of 50 frames each in TIFF format] | Kieuvongngam V, Chen J [Pubmed: 35074919] [DOI: 10.1073/pnas.2120534119] |
5.2 TB | 3.7 - 4.1 Å |
| 2022-07-01 |  |
Pseudomonas aeruginosa 70S ribosome initiation complex bound to compact IF2 [8056 multi-frame micrographs composed of 31 frames each in TIFF format] | Basu RS, Sherman MB, Gagnon MG [Pubmed: 35697706] [DOI: 10.1038/s41467-022-31129-2] |
1.7 TB | 2.6 - 3.6 Å |
| 2022-09-06 |  |
Cryo-EM images of equine apo-ferritin recorded as demonstration of MeasureIce software [626 multi-frame micrographs composed of 8 frames each in TIFF format] | Brown HG [Pubmed: 35965271] [DOI: 10.1038/s42003-022-03698-x] |
127.4 GB | 1.88 Å |
| 2022-05-20 |  |
Single-particle reconstruction of Tick-borne encephalitis virus (Final reconstruction) [multiple data sets in TIFF format] | Pulkkinen LIA, Barrass SV, Domanska A, Överby AK, Anastasina M, Butcher SJ [Pubmed: 35458522] [DOI: 10.3390/v14040792] |
16.4 TB | 3.3 Å |
| 2022-04-29 |  |
Raw data for "Structure of polymerized type V pilin reveals assembly mechanism involving protease-mediated strand exchange" [1153 micrographs in MRC format] | Shibata S, Shoji M, Okada K, Matsunami H, Matthews M, Imada K, Nakayama K, Wolf M [Pubmed: 32284566] [DOI: 10.1038/s41564-020-0705-1] |
72.1 GB | 3.6 Å |
| 2022-07-15 |  |
Single particle cryo-EM dataset of mouse heavy chain apoferritin in plunge-frozen vitrified ice [167 multi-frame micrographs composed of 30 frames each in MRC format] | Harder OF, Voss JM, Olshin PK, Drabbels M, Lorenz UJ [Pubmed: 35775987] [DOI: 10.1107/S205979832200554X] |
82.8 GB | 4.57 Å |
| 2022-07-15 |  |
Single particle cryo-EM dataset of mouse heavy chain apoferritin in laser-melted and revitrified ice [100 multi-frame micrographs composed of 30 frames each in MRC format] | Harder OF, Voss JM, Olshin PK, Drabbels M, Lorenz UJ [Pubmed: 35775987] [DOI: 10.1107/S205979832200554X] |
34.9 GB | 4.25 Å |
| 2022-07-15 |  |
Single particle cryo-EM dataset of cowpea chlorotic mottle virus in plunge-frozen vitrified ice [272 multi-frame micrographs composed of 30 frames each in MRC format] | Harder OF, Voss JM, Olshin PK, Drabbels M, Lorenz UJ [Pubmed: 35775987] [DOI: 10.1107/S205979832200554X] |
95.6 GB | 4.98 Å |
| 2022-07-15 |  |
Single particle cryo-EM dataset of cowpea chlorotic mottle virus in laser-melted and revitrified ice [451 multi-frame micrographs composed of 30 frames each in MRC format] | Harder OF, Voss JM, Olshin PK, Drabbels M, Lorenz UJ [Pubmed: 35775987] [DOI: 10.1107/S205979832200554X] |
153.9 GB | 5.2 Å |
| 2022-06-20 |  |
Cryo-EM data used for the determination of the structures of LACV-L in 3 different states: replication initiation state, transcription capped primer active site entry state and transcription initiation state [14341 multi-frame micrographs composed of 40 frames each in TIFF format] | Arragain B, Durieux Trouilleton Q, Baudin F, Provaznik J, Azevedo N, Cusack S, Schoehn G, Malet H [Pubmed: 35173159] [DOI: 10.1038/s41467-022-28428-z] |
2.2 TB | 2.8 - 3.6 Å |
| 2022-05-24 |  |
Cryo-EM data used for the determination of LACV-L structure in transcription early-elongation state [2510 multi-frame micrographs composed of 60 frames each in TIFF format] | Arragain B, Durieux Trouilleton Q, Baudin F, Provaznik J, Azevedo N, Cusack S, Schoehn G, Malet H [Pubmed: 35173159] [DOI: 10.1038/s41467-022-28428-z] |
721.4 GB | 3.3 Å |
| 2022-06-17 |  |
E. coli 50S ribosome bound to compounds VM2 and VS1 [multiple data sets in TIFF and MRC formats] | Pellegrino J, Lee DJ, Fraser JS, Seiple IB | 1.3 TB | 2.29 Å |
| 2022-04-25 |  |
Cryo electron microscopy of in vitro recombinant SAA1.1 amyloid fibrils [multiple data sets in TIFF and JPEG formats] | Schmidt MS [Pubmed: 33579941] [DOI: 10.1038/s41467-021-21129-z] |
525.4 GB | 2.73 - 2.95 Å |
| 2022-05-03 |  |
Cryo-EM Structures of Glucocorticoid Receptor-Hsp90-p23 [the GR Maturation Complex], Hsp90-p23, and MBP-Hsp90-p23 [multiple data sets in MRC format] | Noddings CM, Wang RY, Agard DA [Pubmed: 34937936] [DOI: 10.1038/s41586-021-04236-1] |
494.1 GB | 2.56 - 3.63 Å |
| 2022-04-29 |  |
Cryogenic electron microscopy structure of full length human meta vinculin [3005 multi-frame micrographs composed of 40 frames each in TIFF format] | Izard T, Rangarajan ES [Pubmed: 33440717] [DOI: 10.3390/ijms22020645] |
744.8 GB | 4.15 - 4.5 Å |
| 2022-04-29 |  |
Cryo electron microscopy of wild-type hyaluronan synthase with UDP [3062 multi-frame micrographs composed of 40 frames each in TIFF format] | Maloney FP, Kuklewicz J, Zimmer J [Pubmed: 35355017] [DOI: 10.1038/s41586-022-04534-2] |
818.1 GB | 3.1 Å |
| 2022-06-22 |  |
Cryo electron microscopy of inactive hyaluronan synthase with UDP-GlcNAc [9026 multi-frame micrographs composed of 40 frames each in TIFF format] | Maloney FP, Kuklewicz J, Zimmer J [Pubmed: 35355017] [DOI: 10.1038/s41586-022-04534-2] |
2.3 TB | 2.7 - 3.1 Å |
| 2022-05-20 |  |
Single-particle reconstruction of Tick-borne encephalitis virus (Preparation 1) [14135 multi-frame micrographs composed of 30 frames each in MRC format] | Pulkkinen LIA, Barrass SV, Domanska A, Överby AK, Anastasina M, Butcher SJ [Pubmed: 35458522] [DOI: 10.3390/v14040792] |
6.2 TB | 3.5 Å |
| 2022-07-27 |  |
cryoEM structure of Go-coupled 5-HT5A with agonist 5-CT [4006 micrographs in MRC format] | Fay JF, Roth BL, Zhang S [Pubmed: 35835867] [DOI: 10.1038/s41594-022-00796-6] |
351.8 GB | 2.73 Å |
| 2023-01-18 |  |
Cryo iDPC-STEM single particle analysis of keyhole limpet hemocyanin [multiple data sets in TIFF format] | Mann DM, Lazic I, Wirix M, de Haas F [Pubmed: 36064775] [DOI: 10.1038/s41592-022-01586-0] |
42.9 GB | 6.51 Å |
| 2022-05-20 |  |
CEM1.5M : a cellular EM dataset containing ~1.5 x 106 unlabeled 2D image patches curated for deep learning [1592753 micrographs in TIFF format] | Narayan K | 57.6 GB | — |
| 2022-07-27 |  |
CryoEM structure of Go-coupled 5-HT5AR in complex with Lisuride [4633 micrographs in MRC format] | Fay JF, Roth BL, Zhang S [Pubmed: 35835867] [DOI: 10.1038/s41594-022-00796-6] |
406.8 GB | 2.79 Å |
| 2022-05-10 |  |
CEM-MitoLab: a dataset of ~22K cellular EM 2D images with label maps of ~135K mitochondrial instances, for deep learning [43720 micrographs in TIFF format] | Narayan K, Conrad RW | 2.8 GB | — |
| 2023-03-01 |  |
CryoEM structure of Go-coupled 5-HT5AR in complex with Methylergometrine [10530 micrographs in MRC format] | Fay JF, Roth BL, Zhang S [Pubmed: 35835867] [DOI: 10.1038/s41594-022-00796-6] |
924.6 GB | 2.75 Å |
| 2022-06-01 |  |
Micrographs of viruses ATV and AFV6 [791 multi-frame micrographs composed of 40 frames each in TIFF format] | Wang F, Cvirkaite-Krupovic V, Krupovic M, Egelman EH [Pubmed: 35325592] [DOI: 10.1016/j.cell.2022.02.019] |
218.0 GB | 3.9 Å |
