Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2019-06-19 |  |
Extracellular albumin and endosomal ions prime enterovirus particles for uncoating that can be prevented by fatty acid saturation [multiple data sets in MRC format] | Domanska A, Ruokolainen VP, Pelliccia M, Laajala MA, Marjomäki VS, Butcher SJ [Pubmed: 31189702] [DOI: 10.1128/JVI.00599-19] |
2.4 TB | 3.5 - 3.6 Å |
| 2022-06-07 |  |
Cryo-EM Structure of the Hyperpolarization-Activated Potassium Channel KAT1 [1503 multi-frame micrographs composed of 40 frames each in MRC format] | Clark MD, Contreras GF, Shen R, Perozo E [Pubmed: 32461693] [DOI: 10.1038/s41586-020-2335-4] |
459.8 GB | 3.5 - 3.8 Å |
| 2023-06-19 |  |
HIV-1 capsid lattice assembled on 30-nm liposome scaffolds in the presence of dNTPs [696 multi-frame micrographs composed of 50 frames each in TIFF format] | Highland CMH, Dick RAD [Pubmed: 37094124] [DOI: 10.1073/pnas.2220545120] |
1.5 TB | 3.5 Å |
| 2015-10-13 |  |
Cryo-EM reveals the conformation of a substrate analogue in the human 20S proteasome core [545 multi-frame micrographs composed of 17 frames each in MRC format] | da Fonseca PCA, Morris EP [Pubmed: 26133119] [DOI: 10.1038/ncomms8573] |
579.1 GB | 3.5 Å |
| 2020-11-20 |  |
Architecture of a catalytically active homotrimeric plant cellulose synthase complex [multiple data sets in TIFF format] | Purushotham PP, Ho RH, Zimmer JZ [Pubmed: 32646917] [DOI: 10.1126/science.abb2978] |
3.4 TB | 3.5 Å |
| 2022-03-28 |  |
Cryo-EM structure of SARS-CoV-2 Main protease C145S in complex with N-terminal peptide [multiple data sets in MRCS and TIFF formats] | Godoy AS, Song Y, Noske GD, Oliva G | 3.3 TB | 3.5 Å |
| 2021-04-14 |  |
Interleukin-10 signaling complex with IL-10RA and IL-10RB [9454 multi-frame micrographs composed of 50 frames each in TIFF format] | Saxton RA, Tsutsumi N, Gati C, Garcia KC [Pubmed: 33737461] [DOI: 10.1126/science.abc8433] |
5.4 TB | 3.5 Å |
| 2022-12-06 |  |
Single particle cryo-EM structure of RIG-I in complex with OHdsRNA [2838 multi-frame micrographs composed of 38 frames each in TIFF format] | Wang W, Pyle AM [Pubmed: 36272408] [DOI: 10.1016/j.molcel.2022.09.029] |
1.5 TB | 3.5 Å |
| 2023-09-14 |  |
Porcine uroplakin complex [multiple data sets in TIFF format] | Oda T, Yanagisawa H, Kikkawa M | 1.4 TB | 3.5 Å |
| 2023-08-18 |  |
AP2 in the presence of heparin [3046 micrographs in MRC format] | Partlow EA, Cannon KS, Hollopeter G, Baker RW [Pubmed: 35347313] [DOI: 10.1038/s41594-022-00749-z] |
267.5 GB | 3.5 - 3.9 Å |
| 2023-01-16 |  |
Structure of the active Gi-coupled human lysophosphatidic acid receptor 1 complexed with a potent agonist [6228 multi-frame micrographs composed of 48 frames each in TIFF format] | Akasaka H, Tanaka T, Sano FK, Matsuzaki Y, Shihoya W, Nureki O [Pubmed: 36109516] [DOI: 10.1038/s41467-022-33121-2] |
1.4 TB | 3.5 - 5.6 Å |
| 2022-01-21 |  |
Cryo-EM structure of a TTYH2 cis-dimer [5014 multi-frame micrographs composed of 50 frames each in TIFF format] | Li B, Hoel CM, Brohawn SG [Pubmed: 34824283] [DOI: 10.1038/s41467-021-27283-8] |
3.4 TB | 3.5 Å |
| 2022-09-09 |  |
E. coli 70S-RNAP expressome complex in collided state (with NusG, 34nt intervening mRNA) [7712 multi-frame micrographs in TIFF format] [7712 multi-frame micrographs composed of 41 frames each in TIFF format] | Webster MW, Takacs M, Zhu C, Vidmar V, Eduljee A, Abdelkareem M, Weixlbaumer A [Pubmed: 32820062] [DOI: 10.1126/science.abb5036] |
2.3 TB | 3.5 Å |
| 2023-10-20 |  |
Cryo-EM of AtMSL10 G556V [3647 multi-frame micrographs composed of 42 frames each in MRC format] [3647 multi-frame micrographs composed of 42 frames each in MRC format] | Zhang J, Yuan P [Pubmed: 37805510] [DOI: 10.1038/s41467-023-42117-5] |
2.8 TB | 3.5 Å |
| 2017-02-09 |  |
Structure of the human HCN1 hyperpolarization-activated cyclic nucleotide-gated ion channel [multiple data sets in MRC format] | Lee CH, MacKinnon R [Pubmed: 28086084] [DOI: 10.1016/j.cell.2016.12.023] |
66.5 GB | 3.5 Å |
| 2024-03-26 |  |
Structure of the human UBR5 HECT-type E3 ubiquitin ligase in a tetrameric form [17529 multi-frame micrographs composed of 75 frames each in TIFF format] | Wang FW [Pubmed: 37040767] [DOI: 10.1016/j.str.2023.03.010] |
7.6 TB | 3.5 Å |
| 2017-05-24 |  |
Single Particle cryoEM Dataset of TcdA1 in prepore state (SPHIRE tutorial) [97 multi-frame micrographs composed of 24 frames each in MRCS format] | Gatsogiannis C, Roderer D, Raunser S [Pubmed: 28570515] [DOI: 10.3791/55448] |
72.8 GB | 3.5 Å |
| 2018-07-18 |  |
Nucleotide-Driven Triple-State Remodeling of the AAA-ATPase Channel in the Activated Human 26S Proteasome [multiple data sets in MRC and MRCS formats] | Zhu Y, Wang WL, Mao Y [Pubmed: 29636472] [DOI: 10.1038/s41467-018-03785-w] |
2.8 TB | 3.5 - 7.0 Å |
| 2023-01-19 |  |
Cryogenic electron tomographs of Coxsackievirus A9 treated with fatty-acid-free BSA [2472 multi-frame micrographs composed of 30 frames each in MRC format] | Domanska A, Plavec Z, Ruokolainen V, Löflund B, Marjomäki V, Butcher SJ [Pubmed: 36448797] [DOI: 10.1128/jvi.01367-22] |
2.3 TB | 3.5 Å |
| 2024-04-15 |  |
Single-particle cryo-EM unaligned micrographs of NTD-directed neutralizing antibody 5-7 in complex with prefusion SARS-CoV-2 spike glycoprotein [6688 multi-frame micrographs composed of 60 frames each in TIFF format] | Cerutti G, Guo Y, Wang P, Nair MS, Wang M, Huang Y, Yu J, Liu L, Katsamba PS, Bahna F, Reddem ER, Kwong PD, Ho DD, Sheng Z, Shapiro L [Pubmed: 34706271] [DOI: 10.1016/j.celrep.2021.109928] |
1.6 TB | 3.5 Å |
| 2022-09-05 |  |
Single-Particle CryoEM of mammalian V-ATPase with the TLDc domain protein mEAK7 bound (Various Datasets) [multiple data sets in MRCS, MRC and EER formats] | Tan YZ, Abbas YM, Wu JZ, Wu D, Keon KA, Hesketh GG, Bueler SA, Gingras AC, Robinson CV, Grinstein S, Rubinstein JL [Pubmed: 35794005] [DOI: 10.26508/lsa.202201527] |
12.7 TB | 3.5 - 4.1 Å |
| 2023-10-13 |  |
Single-particle cryo-EM of APC/C-CDH1-UBE2C-UBE2S-Ubiquitin-CyclinB-NTD [25837 multi-frame micrographs composed of 39 frames each in TIFF format] | Bodrug T, Welsh KA, Bolhuis DL, Paulаkonis E, Martinez-Chacin RC, Liu B, Pinkin N, Bonacci T, Cui L, Xu P, Roscow O, Amann SJ, Grishkovskaya I, Emanuele MJ, Harrison JS, Steimel JP, Hahn KM, Zhang W, Zhong ED, Haselbach D, Brown NG [Pubmed: 37735619] [DOI: 10.1038/s41594-023-01105-5] |
22.8 TB | 3.5 Å |
| 2024-05-01 |  |
Structure of human calcium-sensing receptor in complex with chimeric Gq (miniGisq) protein in detergent [16017 multi-frame micrographs composed of 50 frames each in MRC format] | Zuo H, Park J, Frangaj A, Ye J, Lu G, Manning JJ, Asher WB, Lu Z, Hu G, Wang L, Mendez J, Eng E, Zhang Z, Lin X, Grasucci R, Hendrickson WA, Clarke OB, Javitch JA, Conigrave AD, Fan QR [Pubmed: 38632411] [DOI: 10.1038/s41586-024-07331-1] |
1.4 TB | 3.5 Å |
| 2021-09-24 |  |
Oligo nucleosome fraction from metaphase chromosome in Xenopus egg extract (lot1) [multiple data sets in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
1.3 TB | 3.5 - 5.5 Å |
| 2024-05-03 |  |
Cryo-EM of Caulobacter crescentus tad pilus [14963 multi-frame micrographs composed of 50 frames each in MRC format] | Sonani RR, Sanchez JC, Baumgardt JK, Wright ER, Egelman EH [Pubmed: 38011558] [DOI: 10.1073/pnas.2316668120] |
2.8 TB | 3.5 Å |
