The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
We have seen a large number of SARS-CoV-2 structures being determined rapidly and deposited into the PDB and EMDB, which provides a starting point for structure-guided drug discovery. In order to validate and reanalyze the data by the cryo-EM community, we would like to make the following urgent appeal. a) If you have deposited any cryo-EM structures related to SARS-CoV-2 to the EMDB (and possibly the PDB), please deposit the raw data to EMPIAR. b) If you have collected cryo-EM data related to SARS-CoV-2 but have not yet deposited a structure, please consider depositing the raw data to EMPIAR, so that the cryo-EM community could contribute to processing and model-building.
Release date | Imageset | Title | Authors and references | Size | Resolution |
---|---|---|---|---|---|
2021-01-08 | Nanoscale view of the Clostridium thermocellum cellulosome during cellulose degradation reveals an ecological strategy leading to phenotypic heterogeneity [37 tilt series in MRC format] | Tatli M, Moraïs S, Tovar-Herrera OE, Bomble Y, Bayer EA, Medalia O, Mizrahi I | 1004.3 MB | — | |
2015-10-01 | Tubulin Chaperone complexes TBC-DEG Q73L: alpha beta-tubulin:TBCC complex [stack of 16801 particles in MRC format] | Nithianantham S, Le S, Seto E, Jia W, Leary J, Corbett KD, Moore JK, Al-Bassam J [Pubmed: 26208336] [DOI: 10.7554/eLife.08811] |
1.0 GB | 24.0 Å | |
2023-01-18 | Tilt series of cell-cell contact of two PTK-1 cells [35 tilt series in MRC format] | Lemos M, Bezault A, Sauvanet C, Hanein D, Volkmann N [Pubmed: 36539423] [DOI: 10.1038/s41467-022-35409-9] |
1.1 GB | — | |
2015-10-01 | Tubulin Chaperone complexes TBC-DEG Q73L: alpha beta-tubulin complex [stack of 18361 particles in MRC format] | Nithianantham S, Le S, Seto E, Jia W, Leary J, Corbett KD, Moore JK, Al-Bassam J [Pubmed: 26208336] [DOI: 10.7554/eLife.08811] |
1.1 GB | 24.0 Å | |
2024-02-15 | FIB-SEM dataset showing localization of a Golgi matrix protein GM130 in human hepatocellular carcinoma cell (Huh-7) [564 reconstructed volumes in TIFF format] | Belevich I, Jokitalo E | 1.1 GB | — | |
2024-01-15 | Developing retina in zebrafish 55 hpf larval eye. [16 reconstructed volumes in DM3 format] | Wilsch-Bräuninger M | 1.2 GB | — | |
2020-06-30 | Soft X-ray Tomography of mock-infected U2OS cells [1 tilt series in MRC format] | Kounatidis I, Stanifer ML, Phillips MA, Paul-Gilloteaux P, Heiligenstein X, Wang H, Okolo CA, Fish TM, Spink MC, Stuart DI, Davis I, Boulant S, Grimes JM, Dobbie IM, Harkiolaki M [Pubmed: 32610083] [DOI: 10.1016/j.cell.2020.05.051] |
1.2 GB | — | |
2020-06-30 | Soft X-ray Tomography of mock-infected U2OS cells [1 tilt series in MRC format] | Kounatidis I, Stanifer ML, Phillips MA, Paul-Gilloteaux P, Heiligenstein X, Wang H, Okolo CA, Fish TM, Spink MC, Stuart DI, Davis I, Boulant S, Grimes JM, Dobbie IM, Harkiolaki M [Pubmed: 32610083] [DOI: 10.1016/j.cell.2020.05.051] |
1.2 GB | — | |
2020-06-30 | Soft X-ray Tomography of mock-infected U2OS cells [1 tilt series in MRC format] | Kounatidis I, Stanifer ML, Phillips MA, Paul-Gilloteaux P, Heiligenstein X, Wang H, Okolo CA, Fish TM, Spink MC, Stuart DI, Davis I, Boulant S, Grimes JM, Dobbie IM, Harkiolaki M [Pubmed: 32610083] [DOI: 10.1016/j.cell.2020.05.051] |
1.2 GB | — | |
2020-06-30 | Soft X-ray Tomography of mock-infected U2OS cells [1 tilt series in MRC format] | Kounatidis I, Stanifer ML, Phillips MA, Paul-Gilloteaux P, Heiligenstein X, Wang H, Okolo CA, Fish TM, Spink MC, Stuart DI, Davis I, Boulant S, Grimes JM, Dobbie IM, Harkiolaki M [Pubmed: 32610083] [DOI: 10.1016/j.cell.2020.05.051] |
1.2 GB | — | |
2020-06-30 | Soft X-ray Tomography of mock-infected U2OS cells [1 tilt series in MRC format] | Kounatidis I, Stanifer ML, Phillips MA, Paul-Gilloteaux P, Heiligenstein X, Wang H, Okolo CA, Fish TM, Spink MC, Stuart DI, Davis I, Boulant S, Grimes JM, Dobbie IM, Harkiolaki M [Pubmed: 32610083] [DOI: 10.1016/j.cell.2020.05.051] |
1.2 GB | — | |
2023-03-03 | Cryo-iDPC-STEM structure of TMV - convergence semi-angle 4.0 mrad [multiple data sets in TIFF format] | Lazić I, Wirix M, Leidl ML, Sachse C [Pubmed: 36064775] [DOI: 10.1038/s41592-022-01586-0] |
1.2 GB | 3.5 Å | |
2018-01-03 | 3D reconstruction of the cardiac mitochondria in Neaonate and Adult GP cardiomyocyte [262 multi-frame micrographs composed of 1 frames each in TIFF format] | Kashbour H, Taggart M, White K | 1.2 GB | — | |
2021-03-05 | Dynabeads as Fiducials for SXT and SIM Correlation [700 tilt series in MRC format] | Okolo CA, Kounatidis I, Groen J, Nahas KL, Balint S, Fish T, Koronfel MA, López-Cortajarena A, Dobbie I, Pereiro E, Harkiolaki M | 1.2 GB | — | |
2021-02-26 | Cryo electron tomography of muscle tissue lamella from mice [1 tilt series in MRC format] | Zhang J, Zhang D, Sun L, Ji G, Huang X, Niu T, Xu J, Ma C, Zhu Y, Gao N, Xu W, Sun F [Pubmed: 34174447] [DOI: 10.1016/j.jsb.2021.107763] |
1.3 GB | — | |
2016-11-18 | Focused Ion Beam-Scanning Electron Microscopy of mitochondrial reticulum in murine skeletal muscle [291 reconstructed volumes in MRC format] | Glancy B, Hartnell LM, Malide D, Yu ZX, Combs CA, Connelly PS, Subramaniam S, Balaban RS [Pubmed: 26223627] [DOI: 10.1038/nature14614] |
1.5 GB | — | |
2023-08-18 | Negative stain EM structure of the NF155 extracellular domain [95 micrographs in MRC format] | McKie SJ, Deane JE [Pubmed: 36996106] [DOI: 10.1073/pnas.2218823120] |
1.5 GB | 19.0 Å | |
2015-06-18 | A simulated cryoEM data set of GroEL particles [stack of 10000 particles in MRC format] | Deng Y, Sun F | 1.5 GB | — | |
2023-10-17 | Soft X-ray Cryo Tomography of Trypanosoma [180 reconstructed volumes in MRC format] | Darrow MC [Pubmed: 28246039] [DOI: 10.1016/j.jsb.2017.02.007] |
1.5 GB | — | |
2021-04-30 | FIB-SEM of Gemmata obscuriglobus - a species of the Planctomycetes phylum [1 stitched maps in TIFF format] | Seeger C, Dyrhage K, Mahajan M, Odelgard A, Bergström Lind S, Andersson SGE [DOI: 10.3389/fmicb.2021.643045] |
1.6 GB | — | |
2018-01-03 | 3D reconstruction of cardiac mitochondria in earlly prenatal (G55/57) and mid term(G58/60) and term (G66/68) GP cardiomyocyte [341 multi-frame micrographs composed of 1 frames each in TIFF format] | Kashbour H, Taggart M, White K | 1.7 GB | — | |
2020-09-02 | CryoEM reconstruction of ESCRT-III filament composed of IST1 NTD R16E K27E double mutant [stack of 4556 particles in MRCS format] | Nguyen HC, Talledge N, McCullough J, Sharma A, Moss FR, Iwasa JH, Vershinin MD, Sundquist WI, Frost A [Pubmed: 32251413] [DOI: 10.1038/s41594-020-0404-x] |
1.7 GB | 7.2 Å | |
2018-01-03 | Segment /nodes network analysis of the tubular system of the prenatal stages of GP cardiomyocyte [254 multi-frame micrographs composed of 1 frames each in TIFF format] | Kashbour H, Taggart M | 1.9 GB | — | |
2021-10-19 | Multi-modal adaptor-clathrin contacts drive coated vesicle assembly [stack of 5720 particles in MRCS format] | Smith SM, Larocque G, Wood KM, Morris KL, Roseman AM, Sessions RB, Royle SJ, Smith CJ [Pubmed: 34487371] [DOI: 10.15252/embj.2021108795] |
1.9 GB | — | |
2018-10-22 | The in situ structures of mono-, di-, and trinucleosomes in human heterochromatin [59 tilt series in MRC format] | Cai S, Böck D, Pilhofer M, Gan L [Pubmed: 30091658] [DOI: 10.1091/mbc.E18-05-0331] |
1.9 GB | 21.0 - 24.0 Å |