Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
Due to a storage failure, some data files are currently inaccessible (Markted: Incomplete dataset).
We are currently working to restore, but we are accepting priority requests.(email, inquiry).
We are restoring lost files from backups in the following order:
We apologize for the inconvenience and appreciate your understanding.
大阪大学的EMPIAR-PDBj团队为亚洲EM研究人员向EMPIAR传送大型EM图像数据提供服务。 除了通过互联网将数据直接传送到EBI（UK），研究人员还可以通过邮政或快递服务将数据硬盘发送到大阪大学，或者通过互联网传送到设置于大阪大学的服务器，然后由我们代为传送至数据登录网站。 如果您想使用此项服务，请先通过 电子邮件 与我们联系。
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2022-05-20 |  |
CEM1.5M : a cellular EM dataset containing ~1.5 x 106 unlabeled 2D image patches curated for deep learning [1592753 micrographs in TIFF format] | Narayan K | 57.6 GB | — |
| 2020-12-21 |  |
CEM500K - A large-scale heterogeneous unlabeled cellular electron microscopy image dataset for deep learning. [496544 micrographs in TIFF format] | Conrad RW, Narayan K [DOI: 10.1101/2020.12.11.421792] |
16.6 GB | — |
| 2025-07-30 |  |
CI ring of dusk state KaiC [20066 multi-frame micrographs composed of 50 frames each in EER format] | Dzimianski JV, Crosby P, Balasco Serrao VH, Partch CL | 6.7 TB | 3.21 Å |
| 2021-05-28 |  |
CLEM/FIB-SEM Imaging of T Cells after the Formation of Signaling Microclusters at the Immunological Synapse [160 micrographs in TIFF format] | Narayan K | 26.6 MB | — |
| 2022-12-19 |  |
CLEMSite, a software for automated phenotypic screens using light microscopy and FIB-SEM. [multiple data sets in TIFF format] | Lleti JMSL, Steyer AMS, Schwab YS | 19.7 GB | — |
| 2025-08-01 |  |
CRISPR-associated transposon post-transposition complex micrographs [19936 multi-frame micrographs composed of 765 frames each in EER format] | Tenjo-Castaño F, Sofos N, Stutzke LS, Temperini P, Fuglsang A, Pape T, Mesa P, Montoya G [Pubmed: 38834066] [DOI: 10.1016/j.molcel.2024.05.005] |
6.9 TB | 2.3 Å |
| 2025-06-19 |  |
CRISPR-associated transposon post-transposition complex preliminary micrographs [1717 multi-frame micrographs composed of 40 frames each in MRC format] | Tenjo-Castaño F, Sofos N, Stutzke LS, Temperini P, Fuglsang A, Pape T, Mesa P, Montoya G [Pubmed: 38834066] [DOI: 10.1016/j.molcel.2024.05.005] |
1.2 TB | 2.3 Å |
| 2025-06-30 |  |
CRISPR-associated transposon post-transposition complex preliminary micrographs [1717 multi-frame micrographs composed of 40 frames each in MRC format] | Tenjo-Castaño F, Sofos N, Stutzke LS, Temperini P, Fuglsang A, Pape T, Mesa P, Montoya G [Pubmed: 38834066] [DOI: 10.1016/j.molcel.2024.05.005] |
3.4 TB | 2.3 Å |
| 2026-03-16 |  |
CRYO ARM 200 II mouse heavy chain apoferritin at 1.24 A [13654 multi-frame micrographs composed of 81 frames each in TIFF format] | Danev R, Yanagisawa H, Yamashita K, Eisenstein F, Kikkawa M [Pubmed: 42268577] [DOI: 10.64898/2026.01.09.698548] |
1.6 TB | 1.24 Å |
| 2024-11-27 |  |
CTFFIND5 provides improved insight into quality, tilt and tickness of TEM samples [multiple data sets in MRC format] | Elferich JE, Kong LK, Zottig XZ, Grigorieff NG [Pubmed: 39704651] [DOI: 10.7554/eLife.97227] |
9.1 GB | — |
| 2019-01-18 |  |
Calicivirus VP2 forms a portal to mediate endosome escape [13872 micrographs in MRC format] | Conley MJ, McElwee M, Azmi LB, Gabrielsen M, Byron O, Goodfellow IG, Bhella D [Pubmed: 30626974] [DOI: 10.1038/s41586-018-0852-1] |
867.0 GB | 3.75 Å |
| 2019-01-18 |  |
Calicivirus VP2 forms a portal to mediate endosome escape [5198 micrographs in MRC format] | Conley MJ, McElwee M, Azmi LB, Gabrielsen M, Byron O, Goodfellow IG, Bhella D [Pubmed: 30626974] [DOI: 10.1038/s41586-018-0852-1] |
324.9 GB | 3.0 Å |
| 2023-09-22 |  |
Carboxysome minishell containing CsoS1A4A and CsoS2 [20277 multi-frame micrographs composed of 50 frames each in TIFF format] | Ni T, Jiang Q, Ng PC, Dou H, Liu LN, Zhang P [Pubmed: 37679318] [DOI: 10.1038/s41467-023-41211-y] |
6.9 TB | 1.86 - 2.52 Å |
| 2023-09-22 |  |
Carboxysome minishell containing CsoS1A4A and truncated CsoS2 [13151 multi-frame micrographs composed of 40 frames each in TIFF format] | Ni T, Jiang Q, Ng PC, Dou H, Liu LN, Zhang P [Pubmed: 37679318] [DOI: 10.1038/s41467-023-41211-y] |
2.2 TB | 2.02 - 3.29 Å |
| 2020-04-21 |  |
Cardiac thin filament in low calcium state [8820 multi-frame micrographs composed of 50 frames each in TIFF format] | Oda T, Yanagisawa HA, Wakabayashi T [Pubmed: 31954841] [DOI: 10.1016/j.jsb.2020.107450] |
2.5 TB | 3.0 - 12.0 Å |
| 2025-11-05 |  |
Cas1-2/3 integration complex, 32 bp foreign DNA without PAM, CRISPR leader-repeat-spacer DNA fragment [multiple data sets in TIFF format] | Henriques WS, Bowman J, Hall LN, Gauvin CC, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B [Pubmed: 41072406] [DOI: 10.1016/j.str.2025.09.007] |
6.1 TB | 3.8 - 3.9 Å |
| 2025-11-04 |  |
Cas1-2/3 integration complex, 34 bp foreign DNA with PAM, CRISPR leader-repeat-spacer DNA fragment [multiple data sets in TIFF format] | Henriques WS, Bowman J, Hall LN, Gauvin CC, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B [Pubmed: 41072406] [DOI: 10.1016/j.str.2025.09.007] |
9.1 TB | 4.0 Å |
| 2025-11-04 |  |
Cas1-Cas2/3 heterohexamer bound to foreign dsDNA fragment [2511 multi-frame micrographs composed of 40 frames each in MRC format] | Henriques WS, Bowman J, Hall LN, Gauvin CC, Wei H, Kuang H, Zimanyi CM, Eng ET, Santiago-Frangos A, Wiedenheft B [Pubmed: 41072406] [DOI: 10.1016/j.str.2025.09.007] |
1.7 TB | 3.31 Å |
| 2025-02-04 |  |
Cas12k-sgRNA-dsDNA-S15-TniQ-TnsC transposon recruitment complex [multiple data sets in TIFF and DM4 formats] | Schmitz M, Querques I, Oberli S, Chanez C, Jinek M [Pubmed: 36435179] [DOI: 10.1016/j.cell.2022.11.009] |
4.5 TB | 3.3 - 4.1 Å |
| 2021-06-11 |  |
Cas6-reverse transcriptase-Cas1—Cas2 CRISPR integrase complex [3330 multi-frame micrographs composed of 50 frames each in TIFF format] | Hoel CM, Wang JY, Doudna JA, Brohawn SG [Pubmed: 33958590] [DOI: 10.1038/s41467-021-22900-y] |
2.2 TB | 3.4 - 3.9 Å |
| 2019-03-25 |  |
Catalytic subunit of protein kinase A bound to ATP, manganese, and IP20 movies obtained using Talos Arctica operating at 200 kV equipped with a K2 [4812 multi-frame micrographs composed of 44 frames each in MRC format] | Herzik Jr MA, Wu M, Lander GC [Pubmed: 30833564] [DOI: 10.1038/s41467-019-08991-8] |
619.6 GB | 6.0 Å |
| 2026-01-26 |  |
Cellular Hallmarks from Volume Electron Microscopy reveals Developmental Progression of Plasmodium Ookinetes [23 multi-frame micrographs composed of 194 frames each in TIFF format] | Darif N, Rheinnecker M, Schwab Y, Frischknecht F | 3.3 GB | — |
| 2023-01-30 |  |
ChRmine in MSP1E3D1 lipid nanodisc [10903 multi-frame micrographs composed of 50 frames each in TIFF format] | Tucker K, Sridharan S, Adesnik H, Brohawn SG [Pubmed: 35977941] [DOI: 10.1038/s41467-022-32441-7] |
7.0 TB | 2.74 Å |
| 2026-04-15 |  |
Characterization of membrane structures regulating primary ciliogenesis by quantitative isotropic ultrastructure imaging [85 tilt series in TIFF format] | Lu QL, Harned AH, Narayan KN, Westlake CW | 427.3 MB | — |
| 2020-06-16 |  |
Characterization of the SARS-CoV-2 S Protein: Biophysical, Biochemical, Structural, and Antigenic Analysis [multiple data sets in TIFF and MRC formats] | Herrera NG, Morano NC, Celikgil A, Georgiev GI, Malonis R, Lee JH, Tong K, Vergnolle O, Massimi A, Yen LY, Noble AJ, Kopylov M, Bonanno JB, Garrett-Thomson SC, Hayes DB, Bortz R, Wirchnianski A, Florez C, Laudermilch E, Haslwanter D, Fels J, Dieterle M, Jangra R, Barnhill J, Mengotto A, Kimmel D, Daily J, Pirofski L, Chandran K, Brenowitz M, Garforth S, Eng E, Lai JR, Almo SC [Pubmed: 32587972] [DOI: 10.1101/2020.06.14.150607] |
484.3 GB | 3.22 Å |
