Our EMPIAR-PDBj will suspend the following operations from August 10, 2024 (Saturday) to August 18, 2024 (Sunday):
Web servers and data downloads will remain available during this period.
Additionally, please be aware that EMPIAR-EBI will also be closed for annotation operations from July 25, 2024 (Thursday) to August 18, 2024 (Sunday).
Thank you.
大阪大学的EMPIAR-PDBj团队为亚洲EM研究人员向EMPIAR传送大型EM图像数据提供服务。 除了通过互联网将数据直接传送到EBI(UK),研究人员还可以通过邮政或快递服务将数据硬盘发送到大阪大学,或者通过互联网传送到设置于大阪大学的服务器,然后由我们代为传送至数据登录网站。 如果您想使用此项服务,请先通过 电子邮件 与我们联系。
Release date | Imageset | Title | Authors and references | Size | Resolution |
---|---|---|---|---|---|
2018-08-16 | Combining high-resolution cryo-electron microscopy and mutagenesis to develop cowpea mosaic virus for bionanotechnology [5619 multi-frame micrographs composed of 1 frames each in MRC format] | Thompson RF, Iadanza MG, Hesketh EL, Rawson S, Ranson NA, Meshcheriakova Y, Durrant A, Lomonossoff GP [Pubmed: 30487656] [DOI: 10.1038/s41596-018-0084-8] |
351.5 GB | 2.7 Å | |
2021-03-19 | Complex of yeast cytoplasmic dynein MTBD-High and MT with DTT [624 multi-frame micrographs composed of 40 frames each in TIFF format] | Komori Y, Nishida N, Takarada O, Watanabe A, Tamura S, Kubo S, Shimada I, Kikkawa M [Pubmed: 32098965] [DOI: 10.1038/s41467-020-14842-8] |
124.3 GB | 3.62 Å | |
2021-03-19 | Complex of yeast cytoplasmic dynein MTBD-High and MT without DTT [1825 multi-frame micrographs composed of 40 frames each in TIFF format] | Komori Y, Nishida N, Takarada O, Watanabe A, Tamura S, Kubo S, Shimada I, Kikkawa M [Pubmed: 32098965] [DOI: 10.1038/s41467-020-14842-8] |
360.5 GB | 3.94 Å | |
2018-04-03 | Conformational Dynamics of human Bact spliceosome [multiple data sets in MRC format] | Haselbach D, Stark H [Pubmed: 29361316] [DOI: 10.1016/j.cell.2018.01.010] |
2.8 TB | 4.5 - 16.0 Å | |
2017-08-23 | Conformational Landscape of the p28-Bound Human Proteasome Regulatory Particle [stack of 117471 particles in MRCS format] | Lu Y, Wu J, Dong Y, Chen S, Sun S, Ma YB, Ouyang Q, Finley D, Kirschner MW, Mao Y [Pubmed: 28689658] [DOI: 10.1016/j.molcel.2017.06.007] |
70.0 GB | 4.5 - 8.9 Å | |
2022-05-17 | Conformational rearrangements upon start codon recognition in human 48S translation initiation complex [multiple data sets in MRC and MRCS formats] | Yi SH, Petrychenko V, Schliep JE, Goyal A, Linden A, Chari A, Urlaub H, Stark H, Rodnina MV, Adio S, Fischer N [Pubmed: 35489072] [DOI: 10.1093/nar/gkac283] |
1.1 TB | 3.7 - 4.7 Å | |
2020-10-02 | Connexin-46/50 in a dynamic lipid environment resolved by CryoEM at 1.9 Å [2087 multi-frame micrographs composed of 150 frames each in TIFF format] | Flores JA, Haddad BG, Dolan KA, Myers JB, Yoshioka CC, Copperman J, Zuckerman DM, Reichow SL [Pubmed: 32859914] [DOI: 10.1038/s41467-020-18120-5] |
4.1 TB | 1.94 - 2.5 Å | |
2018-05-02 | Correlative microscopy of vitreous sections provides insights into BAR-domain organisation in situ [9 tilt series in MRC format] | Bharat TAM, Hoffmann PC, Kukulski W [Pubmed: 29681471] [DOI: 10.1016/j.str.2018.03.015] |
27.9 GB | — | |
2020-08-06 | Cropped regions from Serial Block Face SEM of HeLa cell pellet with 10 nm pixels and 50 nm slices (benchmark dataset) [18 multi-frame micrographs composed of 300 frames each in TIFF format] | Peddie CP, Jones ML, Collinson LM | 15.6 GB | — | |
2022-06-01 | Crosshair, semi-automated targeting for electron microscopy with a motorised ultramicrotome [multiple data sets in TIFF and PNG formats] | Meechan K, Guan W, Riedinger A, Stankova V, Yoshimura A, Pipitone R, Milberger A, Schaar H, Romero-Brey I, Templin R, Peddie C J, Schieber N L, Jones M L, Collinson L, Schwab Y | 151.0 GB | — | |
2021-11-16 | Cryo EM Structure of the E. coli BcsB Hexamer [multiple data sets in TIFF format] | Acheson JF, Ho R, Goularte NF, Cegelski L, Zimmer J [Pubmed: 33712813] [DOI: 10.1038/s41594-021-00569-7] |
837.2 GB | 3.4 Å | |
2024-04-17 | Cryo EM of ABC transporter KpsMT in complex with KpsE - Apo 2, Glycolipid 1 and Glycolipid 2 states [13961 multi-frame micrographs composed of 40 frames each in TIFF format] | Kuklewicz J [Pubmed: 38570679] [DOI: 10.1038/s41586-024-07248-9] |
3.6 TB | 3.3 - 3.5 Å | |
2024-04-17 | Cryo EM of ABC transporter KpsMT(E151Q) in complex with KpsE - ATP-bound state [multiple data sets in TIFF format] | Kuklewicz J [Pubmed: 38570679] [DOI: 10.1038/s41586-024-07248-9] |
2.3 TB | 3.1 - 3.3 Å | |
2017-07-26 | Cryo EM of Type VI Secretion System VipA-N2/VipB contracted sheath [186 multi-frame micrographs composed of 30 frames each in MRC format] | Wang J, Basler M [Pubmed: 28947741] [DOI: 10.1038/s41564-017-0020-7] |
74.0 GB | 4.0 Å | |
2017-07-26 | Cryo EM of Type VI Secretion System VipA-N3/VipB/Hcp complex [260 multi-frame micrographs composed of 30 frames each in TIFF format] | Wang J, Basler M [Pubmed: 28947741] [DOI: 10.1038/s41564-017-0020-7] |
26.2 GB | 3.7 Å | |
2022-04-25 | Cryo EM structure of ΔRing6 LetB [10764 multi-frame micrographs composed of 30 frames each in TIFF format] | Vieni C, Coudray N, Bhabha G, Ekiert DC [Pubmed: 35077766] [DOI: 10.1016/j.jmb.2022.167463] |
3.0 TB | 3.2 Å | |
2021-02-10 | Cryo EM strutcture of the full-length WzmWzt ABC transporter required for lipid-linked O antigen transport [5938 multi-frame micrographs composed of 31 frames each in TIFF format] | Zimmer J, Caffalette CA [Pubmed: 33443152] [DOI: 10.1073/pnas.2016144118] |
2.2 TB | 3.6 Å | |
2023-01-19 | Cryo Electron Microscopy of CHMP1B/IST1 Membrane-Bound Filaments with Brominated Lipid Probes [multiple data sets in MRC format] | Moss FR, Lincoff J, Tucker M, Mohammed A, Grabe M, Frost A [Pubmed: 36624348] [DOI: 10.1038/s41594-022-00898-1] |
3.7 TB | 2.8 - 9.5 Å | |
2020-03-20 | Cryo Electron Tomograms of Membrane Fractions of Rabbit Skeletal Muscle for Structural Determination of RyR1 in SR Vesicles [82 tilt series in MRC format] | Chen W, Kudryashev M [Pubmed: 32147968] [DOI: 10.15252/embr.201949891] |
254.2 GB | 12.6 - 38.0 Å | |
2020-08-18 | Cryo Electron Tomograms of Membrane Fractions of Rabbit Skeletal Muscle for Structural Determination of RyR1 in SR Vesicles at subnanometer resolution [48 tilt series in MRC format] | Sanchez RM, Zhang Y, Chen W, Dietrich L, Kudryashev M [Pubmed: 32709843] [DOI: 10.1038/s41467-020-17466-0] |
435.8 GB | 9.1 Å | |
2021-11-01 | Cryo Electron Tomography of Ca.M.lanthanidiphila for subtomographic averaging of the S-layer [multiple data sets in MRC format] | Gambelli L, Mesman R, Versantvoort W, Diebolder CA, Engel A, Evers W, Jetten MSM, Pabst M, Daum B, van Niftrik L [Pubmed: 34925275] [DOI: 10.3389/fmicb.2021.766527] |
135.7 GB | 25.0 Å | |
2021-10-25 | Cryo Electron Tomography of isolated S-layer patches from Ca.M.lanthanidiphila [multiple data sets in MRC format] | Gambelli L, Mesman R, Versantvoort W, Diebolder CA, Engel A, Evers W, Jetten MSM, Pabst M, Daum B, van Niftrik L [Pubmed: 34925275] [DOI: 10.3389/fmicb.2021.766527] |
46.3 GB | 21.0 Å | |
2024-01-16 | Cryo Electron tomography of germinated polar tubes from Vairimorpha necatrix [multiple data sets in MRC format] | Sharma H, Jespersen N, Ehrenbolger K, Carlson L.A., Barandun J [DOI: 10.1101/2023.05.31.543061] |
94.1 GB | 46.0 Å | |
2021-11-01 | Cryo Soft X-ray data for tetraspeck correlation [multiple data sets in MRC format] | Groen J, Pereiro E [Pubmed: 33990802] [DOI: 10.1038/s41596-021-00522-4] |
15.1 GB | — | |
2021-02-12 | Cryo Soft X-ray data for tetraspeck correlation [multiple data sets in MRC format] | Groen J, Pereiro E [Pubmed: 33990802] [DOI: 10.1038/s41596-021-00522-4] |
6.8 GB | — |