Due to a storage failure, some data files are currently inaccessible (Markted: Incomplete dataset).
We are currently working to restore, but we are accepting priority requests.(email, inquiry).
We are restoring lost files from backups in the following order:
We apologize for the inconvenience and appreciate your understanding.
大阪大学的EMPIAR-PDBj团队为亚洲EM研究人员向EMPIAR传送大型EM图像数据提供服务。 除了通过互联网将数据直接传送到EBI(UK),研究人员还可以通过邮政或快递服务将数据硬盘发送到大阪大学,或者通过互联网传送到设置于大阪大学的服务器,然后由我们代为传送至数据登录网站。 如果您想使用此项服务,请先通过 电子邮件 与我们联系。
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2021-09-24 | 'Freed' nucleosome isolated from non-crosslinked interphase chromosome in Xenopus egg extract lot2 [multiple data sets in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
1.1 TB | 5.44 Å | |
| 2025-12-08 | .zarr file of a tomographic scan of a mouse skull [1024 reconstructed volumes in BIG DATA VIEWER HDF5 format] | Haberthür D | 2.6 GB | — | |
| 2022-11-29 | 1.42 Angstrom Apoferritin structure determined using G1 Titan krios S-FEG operated at 300kV, zero loss imaging using Gatan BioQuantum energy filter operated at 10eV slit width and imaged using K2 camera. [multiple data sets in MRC format] | Venugopal H | 668.6 GB | 1.42 Å | |
| 2024-06-12 | 1.6Å Apoferritin from 200kV Glacios with Selectris Falcon 4 [4984 multi-frame micrographs composed of 371 frames each in EER format] | Koh A, Khavnekar S, Yang W, Karia D, Cats D, van der Ploeg R, Grollios F, Raschdorf O, Kotecha A, Němeček D [Pubmed: 35377368] [DOI: 10.3791/63519] |
754.4 GB | 1.635 Å | |
| 2025-12-17 | 1.7 A structure of conventional mouse heavy chain Apoferritin [935 multi-frame micrographs composed of 50 frames each in EER format] | Curtis WA, Hruby J, Krüger CR, Barrass SV, Drabbels M, Lorenz UJ [DOI: 10.1101/2025.05.05.652279] |
370.1 GB | 1.7 Å | |
| 2025-12-18 | 1.8 A structure of SiO2-sealed and revitrified (210 us) mouse heavy chain Apoferritin [8398 multi-frame micrographs composed of 50 frames each in EER format] | Curtis WA, Hruby J, Krüger CR, Barrass SV, Drabbels M, Lorenz UJ [DOI: 10.1101/2025.05.05.652279] |
2.6 TB | 1.8 Å | |
| 2020-06-26 | 1.8 Å resolution structure of β-galactosidase with a 200 kV CRYO ARM electron microscope [4949 multi-frame micrographs composed of 40 frames each in TIFF format] | Merk A, Fukumura T, Zhu X, Darling JE, Grisshammer R, Ognjenovic J, Subramaniam S [Pubmed: 32695410] [DOI: 10.1107/S2052252520006855] |
1.1 TB | 1.8 Å | |
| 2021-03-19 | 1.93 A cryo-EM structure of streptavidin [2277 multi-frame micrographs composed of 70 frames each in TIFF format] | Hiraizumi M, Yamashita K, Nisihzawa T, Kikkawa M, Nureki O | 373.1 GB | 1.93 Å | |
| 2026-03-09 | 100 kV apoferritin at 1.91 A with DECTRIS SINGLA detector on CRYO ARM 200 II [17424 multi-frame micrographs composed of 13500 frames each in BIG DATA VIEWER HDF5 format] | Danev R, Yanagisawa H, Yamashita K, Eisenstein F, Kikkawa M [DOI: 10.64898/2026.01.09.698548] |
8.0 TB | 1.91 Å | |
| 2021-06-09 | 120kV MicroED structure of FUS (37-42) SYSGYS solved from merged datasets at 0.60 A [8 diffraction images in SMV format] | Zhou H, Luo F, Luo Z, Li D, Liu C, Li X [Pubmed: 31334636] [DOI: 10.1021/acs.analchem.9b01162] |
9.2 GB | 0.6 Å | |
| 2020-10-23 | 170314, Five-day-old Col-0 Arabidopsis thaliana root, phloem pole unloading zone (339-381 um from the root tip) [multiple data sets in MRC format] | Paterlini A, Belevich I, Jokitalo E, Helariutta Y [Pubmed: 31182845] [DOI: 10.1038/s41477-019-0429-5] |
43.2 GB | — | |
| 2020-11-18 | 2.05 angstrom resolution structure determination of sulfur oxygenase reductase using 200kV cryo-EM [2558 multi-frame micrographs composed of 50 frames each in MRC format] | Moriya T, Adachi N, Sato Y, Arakawa T, Kawasaki M, Yamada C, Fushinobu S, Senda T [Pubmed: 32775998] [DOI: 10.1016/j.yjsbx.2020.100030] |
1.7 TB | 2.05 - 2.24 Å | |
| 2024-06-13 | 2.08A Apoferritin Structure Solved Using an Indirect Scintillator-Coupled CMOS Detector at 300 kV [1893 multi-frame micrographs composed of 23 frames each in MRCS format] | Aramaki S, Yoshida Y, Tanihara T, Oyama K, Otsuki K, Terada Y, Matsunaga N, Ohdo S, Mayanagi K | 6.3 TB | 2.08 Å | |
| 2022-11-15 | 2.1 Å resolution structure of β-galactosidase obtained from Glacios equipped with Falcon 3 [multiple data sets in TIFF format] | Merk A, Darling JE, Grisshammer R, Ognjenović J | 4.8 TB | 2.1 Å | |
| 2022-03-14 | 2.1Å T20S Proteosome from 200kV Glacios with Selectris Falcon 4 [4075 multi-frame micrographs composed of 854 frames each in EER format] | Koh FA, Khavnekar K, Kotecha A [Pubmed: 35377368] [DOI: 10.3791/63519] |
1.5 TB | 2.1 Å | |
| 2016-04-15 | 2.2 A resolution cryo-EM structure of beta-galactosidase in complex with a cell-permeant inhibitor [multiple data sets in MRC format] | Bartesaghi A, Merk A, Banerjee S, Matthies D, Wu X, Milne JL, Subramaniam S [Pubmed: 25953817] [DOI: 10.1126/science.aab1576] |
631.2 GB | 2.2 Å | |
| 2022-04-01 | 2.3 A structure of the ATP-dependent chromatin remodeler Chd1 bound to the nucleosome in a nucleotide-free state [multiple data sets in TIFF, MRC and MRCS formats] | Nodelman IM, Das S, Faustino AM, Fried SD, Bowman GD, Armache JP [Pubmed: 35173352] [DOI: 10.1038/s41594-021-00719-x] |
4.7 TB | 2.3 - 2.9 Å | |
| 2025-12-12 | 2.3 A structure of the SiO2-sealed and revitrified (150 us) E.coli 50S ribosomal subunit [11896 multi-frame micrographs composed of 1 frames each in MRC format] | Curtis WA, Hruby J, Krüger CR, Barrass SV, Drabbels M, Lorenz UJ [DOI: 10.1101/2025.05.05.652279] |
4.7 TB | 2.3 Å | |
| 2020-05-26 | 2.3 Angstrom cryo-EM reconstructions of HemQ from Geobacillus [258 multi-frame micrographs composed of 100 frames each in MRCS format] | Bromberg R, Guo Y, Borek D, Otwinowski Z [DOI: 10.1107/S2052252520002444] |
1.4 TB | 2.32 Å | |
| 2025-12-10 | 2.4 A structure of the SiO2-sealed and revitrified (30 us) E.coli 50S ribosomal subunit [10535 multi-frame micrographs composed of 1 frames each in MRC format] | Curtis WA, Hruby J, Krüger CR, Barrass SV, Drabbels M, Lorenz UJ [DOI: 10.1101/2025.05.05.652279] |
3.7 TB | 2.4 Å | |
| 2020-05-27 | 2.6 Angstrom cryo-EM reconstructions of HemQ from Geobacillus in the presence of substantial aberrations [257 multi-frame micrographs composed of 100 frames each in MRCS format] | Bromberg R, Guo Y, Borek D, Otwinowski Z [DOI: 10.1107/S2052252520002444] |
1.3 TB | 2.6 Å | |
| 2024-06-13 | 2.6A b-Galactosidase Structure Solved Using an Indirect Scintillator-Coupled CMOS Detector at 300 kV [11684 multi-frame micrographs composed of 23 frames each in MRC format] | Aramaki S, Yoshida Y, Tanihara T, Oyama K, Otsuki K, Terada Y, Matsunaga N, Ohdo S, Mayanagi K | 4.1 TB | 2.62 Å | |
| 2025-12-10 | 2.7 A structure of the SiO2-sealed and revitrified (300 us) E.coli 50S ribosomal subunit [13133 multi-frame micrographs composed of 1 frames each in MRC format] | Curtis WA, Hruby J, Krüger CR, Barrass SV, Drabbels M, Lorenz UJ [DOI: 10.1101/2025.05.05.652279] |
3.8 TB | 2.7 Å | |
| 2020-05-27 | 2.7 Angstrom cryo-EM reconstructions of glucose isomerase in the presence of substantial aberrations [202 multi-frame micrographs composed of 200 frames each in MRCS format] | Bromberg R, Guo Y, Borek D, Otwinowski Z [DOI: 10.1107/S2052252520002444] |
1.0 TB | 2.7 Å | |
| 2021-06-09 | 200kV MicroED structure of FUS (37-42) SYSGYS solved from merged datasets at 0.65 A [8 diffraction images in SMV format] | Zhou H, Luo F, Luo Z, Li D, Liu C, Li X [Pubmed: 31334636] [DOI: 10.1021/acs.analchem.9b01162] |
9.5 GB | 0.65 Å |