Our EMPIAR-PDBj will suspend the following operations from August 10, 2024 (Saturday) to August 18, 2024 (Sunday):
Web servers and data downloads will remain available during this period.
Additionally, please be aware that EMPIAR-EBI will also be closed for annotation operations from July 25, 2024 (Thursday) to August 18, 2024 (Sunday).
Thank you.
大阪大学的EMPIAR-PDBj团队为亚洲EM研究人员向EMPIAR传送大型EM图像数据提供服务。 除了通过互联网将数据直接传送到EBI(UK),研究人员还可以通过邮政或快递服务将数据硬盘发送到大阪大学,或者通过互联网传送到设置于大阪大学的服务器,然后由我们代为传送至数据登录网站。 如果您想使用此项服务,请先通过 电子邮件 与我们联系。
Release date | Imageset | Title | Authors and references | Size | Resolution |
---|---|---|---|---|---|
2024-02-06 | CryoEM structures of the human CLC-2-AK42 voltage gated chloride channel reveal a ball and chain gating mechanism [stack of 11498 particles in MRC format] | Xu M, Pintilie G, Liu Y, Chiu W, Maduke M | 1.2 TB | 2.46 Å | |
2024-02-06 | CryoEM structures of the human CLC-2 voltage gated chloride channel reveal a ball and chain gating mechanism [stack of 11404 particles in MRC format] | Xu M, Pintilie G, Liu Y, Chiu W, Maduke M | 1.2 TB | 2.46 Å | |
2022-04-19 | Atomic structure of Lanreotide nanotubes revealed by cryo-EM [stack of 631121 particles in MRCS format] | Pieri L, Wang F, Bressanelli S, Egelman EH, Paternostre M [Pubmed: 35042822] [DOI: 10.1073/pnas.2120346119] |
362.5 GB | 2.46 Å | |
2021-09-17 | Cryo-EM structure of SARS-CoV-2 NSP15 NendoU at pH 6.0 [4080 micrographs in MRC format] | Godoy AS | 359.3 GB | 2.48 Å | |
2022-11-15 | Reconstituted USP1, UAF1, FANCI, mono-ubiquitinated FANCD2 and the inhibitor ML323 [10998 multi-frame micrographs composed of 40 frames each in TIFF format] | Rennie ML, Walden H [Pubmed: 36170365] [DOI: 10.1126/sciadv.abq6353] |
2.3 TB | 2.49 - 2.85 Å | |
2024-02-06 | RNA-triggered protein cleavage and cell growth arrest by the type III-E CRISPR nuclease-protease [multiple data sets in TIFF format] | Kato K, Okazaki S, Ishikawa J, Isayama Y, Nishizawa T, Nishimasu H [Pubmed: 36423304] [DOI: 10.1126/science.add7347] |
2.6 TB | 2.49 - 2.84 Å | |
2020-11-27 | Movies of Nsp7-Nsp8-Nsp12 SARS-CoV2 RNA-dependent RNA polymerase in complex with template:primer dsRNA and favipiravir-RTP [63977 multi-frame micrographs composed of 24 frames each in MRCS format] | Naydenova K, Muir KW, Wu LF, Zhang Z, Coscia F, Peet MJ, Castro-Hartmann P, Qian P, Sader K, Dent K, Kimanius D, Sutherland JD, Löwe J, Barford D, Russo CJ [Pubmed: 33526596] [DOI: 10.1073/pnas.2021946118] |
23.9 TB | 2.5 Å | |
2020-10-16 | E. coli 50S ribosome bound to compound 40o [1051 multi-frame micrographs composed of 80 frames each in TIFF format] | Pellegrino J, Lee DJ, Fraser JS, Seiple IB [Pubmed: 32968273] [DOI: 10.1038/s41586-020-2761-3] |
446.9 GB | 2.5 Å | |
2020-10-16 | E. coli 50S ribosome bound to compound 46 [921 multi-frame micrographs composed of 100 frames each in TIFF format] | Pellegrino J, Lee DJ, Fraser JS, Seiple IB [Pubmed: 32968273] [DOI: 10.1038/s41586-020-2761-3] |
470.7 GB | 2.5 Å | |
2020-10-16 | E. coli 50S ribosome bound to compound 47 [2568 multi-frame micrographs composed of 53 frames each in TIFF format] | Pellegrino J, Lee DJ, Fraser JS, Seiple IB [Pubmed: 32968273] [DOI: 10.1038/s41586-020-2761-3] |
947.9 GB | 2.5 Å | |
2024-06-12 | Graphene-sandwiched spike [2200 multi-frame micrographs composed of 32 frames each in TIFF format] | Xu J, Gao X, Zheng L, Jia X, Xu K, Ma Y, Wei X, Liu N, Peng H, Wang HW [Pubmed: 38252835] [DOI: 10.1073/pnas.2309384121] |
1.5 TB | 2.5 Å | |
2023-01-03 | Cryo-EM structure of hnRNPDL amyloid fibrils [multiple data sets in TIFF format] | Chaves-Sanjuan A, Garcia-Pardo J, Bartolome-Nafria A, Gil-Garcia M, Visentin C, Bolognesi M, Ricagno S, Ventura S [Pubmed: 36646699] [DOI: 10.1038/s41467-023-35854-0] |
880.1 GB | 2.5 Å | |
2021-01-29 | Cryo-EM structure of the human CDK-activating kinase bound to the clinical inhibitor ICEC0942 [multiple data sets in TIFF format] | Greber BJ, Remis J, Ali S, Nogales E [Pubmed: 33476598] [DOI: 10.1016/j.bpj.2020.12.030] |
3.8 TB | 2.5 - 2.6 Å | |
2023-01-18 | Organizing Structural Principles of the Interleukin-17 Ligand-Receptor Axis [multiple data sets in TIFF format] | Caveney NA, Wilson SC, Garcia KC [Pubmed: 35863378] [DOI: 10.1038/s41586-022-05116-y] |
17.7 TB | 2.5 - 4.4 Å | |
2024-06-14 | Cryo-EM structure of Pseudomonas Aeruginosa TonB-dependent transporter PhuR in complex with synthetic antibody and heme [5031 multi-frame micrographs composed of 50 frames each in TIFF format] | Erramilli SK, Knejski PP, Kossiakoff AA [Pubmed: 38325368] [DOI: 10.1016/j.str.2024.01.007] |
2.9 TB | 2.5 Å | |
2024-02-28 | FMRFa-bound Malacoceros FaNaC1 in lipid nanodiscs [multiple data sets in TIFF format] | Kalienkova V, Dandamudi M, Paulino C, Lynagh T [Pubmed: 38337033] [DOI: 10.1038/s41594-023-01198-y] |
866.2 GB | 2.5 Å | |
2023-09-14 | Cryo-EM Structure of Membrane-Bound Alcohol Dehydrogenase from Gluconobacter oxydans (ALDH) [13797 multi-frame micrographs composed of 40 frames each in TIFF format] | Adachi T, Miyata T, Makino F, Tanaka H, Namba K, Kano K, Sowa K, Kitazumi Y, Shirai O [DOI: 10.1021/acscatal.3c01962] |
3.0 TB | 2.5 Å | |
2024-06-07 | Single particle cryo-EM of H. thermoluteolus chaperonin complex [1233 multi-frame micrographs composed of 171 frames each in EER format] | Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S [Pubmed: 38492570] [DOI: 10.1016/j.str.2024.02.012] |
914.8 GB | 2.5 Å | |
2021-03-12 | PKM2 in complex with Compound 6 [590 multi-frame micrographs composed of 75 frames each in TIFF format] | Saur M, Hartshorn MJ, Dong J, Reeks J, Bunkoczi G, Jhoti H, Williams PA [Pubmed: 31877353] [DOI: 10.1016/j.drudis.2019.12.006] |
768.0 GB | 2.5 Å | |
2024-07-03 | Single particle cryo-EM dataset of as-prepared Bos taurus mitochondrial complex I (originally purified in LMNG) proteoliposomes [27014 multi-frame micrographs composed of 40 frames each in TIFF format] | Grba DN, Wright JJ, Fisher W, Yin Z, Hirst J [Pubmed: 38870289] [DOI: 10.1126/science.ado2075] |
5.6 TB | 2.5 - 2.9 Å | |
2022-04-04 | Cryo-EM micrographs of GABA(A)Rs purified from cells expressing human full-length alpha4, beta3 and delta subunits, in presence of HEPES and nanobody Nb25 [18161 multi-frame micrographs composed of 32 frames each in TIFF format] | Sente A, Desai R, Naydenova K, Malinauskas T, Jounaidi Y, Miehling J, Zhou X, Masiulis S, Hardwick SW, Chirgadze DY, Miller KW, Aricescu AR [Pubmed: 35355020] [DOI: 10.1038/s41586-022-04517-3] |
4.1 TB | 2.5 - 2.9 Å | |
2022-01-25 | Single particle cryo-EM dataset of sarkosyl-insoluble fraction from the frontal cortex of an individual with Alzheimer’s disease of amyloid-β 42 filaments [1762 multi-frame micrographs composed of 40 frames each in TIFF format] | Yang Y, Arseni D, Zhang WJ, Huang M, Lovestam SKA, Schweighauser M, Kotecha A, Murzin AG, Peak-Chew S, Macdonald J, Lavenir I, Garringer HJ, Gelpi E, Newell KL, Kovacs GG, Vidal R, Ghetti B, Falcon B, Scheres SHW, Goedert M [Pubmed: 35025654] [DOI: 10.1126/science.abm7285] |
531.9 GB | 2.5 Å | |
2020-11-24 | Motion-corrected micrographs and extracted particle images of the 70S ribosome from the human pathogen Acinetobacter baumannii in complex with tigecycline [multiple data sets in MRC and MRCS formats] | Nicholson D, Edwards TA, O'Neill AJ, Ranson NA [Pubmed: 32857965] [DOI: 10.1016/j.str.2020.08.004] |
538.5 GB | 2.5 - 3.0 Å | |
2022-03-14 | Cryogenic electron microscopy of somatostatin receptor 2/SST14/Gi3 complex [9740 multi-frame micrographs composed of 50 frames each in TIFF format] | Robertson MJ [Pubmed: 35210615] [DOI: 10.1038/s41594-022-00727-5] |
4.5 TB | 2.5 Å | |
2023-02-01 | Mycobacterium phage Che8 [1203 multi-frame micrographs composed of 30 frames each in TIFF format] | Podgorski JM [Pubmed: 36649709] [DOI: 10.1016/j.str.2022.12.012] |
763.1 GB | 2.5 Å |