Our EMPIAR-PDBj will suspend the following operations from August 10, 2024 (Saturday) to August 18, 2024 (Sunday):
Web servers and data downloads will remain available during this period.
Additionally, please be aware that EMPIAR-EBI will also be closed for annotation operations from July 25, 2024 (Thursday) to August 18, 2024 (Sunday).
Thank you.
大阪大学的EMPIAR-PDBj团队为亚洲EM研究人员向EMPIAR传送大型EM图像数据提供服务。 除了通过互联网将数据直接传送到EBI(UK),研究人员还可以通过邮政或快递服务将数据硬盘发送到大阪大学,或者通过互联网传送到设置于大阪大学的服务器,然后由我们代为传送至数据登录网站。 如果您想使用此项服务,请先通过 电子邮件 与我们联系。
Release date | Imageset | Title | Authors and references | Size | Resolution |
---|---|---|---|---|---|
2021-03-05 | Lipid Droplets as Fiducials for SXT and SIM Correlation [700 tilt series in MRC format] | Okolo CA, Kounatidis I, Groen J, Nahas KL, Balint S, Fish T, Koronfel MA, López-Cortajarena A, Dobbie I, Pereiro E, Harkiolaki M | 4.8 GB | — | |
2017-11-30 | FIB-SEM of a dividing cell at 11.2 min after anaphase onset [777 multi-frame micrographs composed of 1 frames each in TIFF format] | Otsuka S, Steyer AM, Schorb M, Heriche JK, Hossain MJ, Sethi S, Kueblbeck M, Schwab Y, Beck M, Ellenberg J [DOI: 10.1038/s41594-017-0001-9] |
11.0 GB | — | |
2020-05-19 | Whole-body integration of gene expression and single-cell morphology [11416 micrographs in TIFF format] | Vergara HM, Pape C, Meechan KI, Zinchenko V, Genoud C, Wanner AA, Mutemi KN, Titze B, Templin RM, Bertucci PY, Simakov O, Dürichen W, Machado P, Savage EL, Schermelleh L, Schwab Y, Friedrich RW, Kreshuk A, Tischer C, Arendt D [Pubmed: 34380046] [DOI: 10.1016/j.cell.2021.07.017] |
1.7 TB | — | |
2021-09-01 | Lysosomes as Fiducials for SXT and SIM Correlation [166 tilt series in TIFF format] | Okolo CA, Kounatidis I, Groen J, Nahas KL, Balint S, Fish T, Koronfel MA, López-Cortajarena A, Dobbie I, Pereiro E, Harkiolaki M | 162.4 MB | — | |
2021-04-14 | Nucleus as Fiducials for SXT and SIM Correlation [1 tilt series in TIFF format] | Okolo CA, Kounatidis I, Groen J, Nahas KL, Balint S, Fish T, Koronfel MA, López-Cortajarena A, Dobbie I, Pereiro E, Harkiolaki M | 2.5 GB | — | |
2020-07-24 | Human delta protocadherin 1 full ectodomains on membranes, tomogram 1 [multiple data sets in MRC format] | Harrison OJ, Brasch J, Katsamba PS, Ahlsen G, Noble AJ, Dan H, Sampogna R, Potter CS, Carragher B, Honig B, Shapiro L [Pubmed: 32101743] [DOI: 10.1016/j.celrep.2020.02.003] |
247.7 GB | — | |
2020-10-09 | Human delta protocadherin 1 full ectodomains on membranes, tomogram 2 [multiple data sets in TIFF, JPEG and MRC formats] | Harrison OJ, Brasch J, Katsamba PS, Ahlsen G, Noble AJ, Dan H, Sampogna R, Potter CS, Carragher B, Honig B, Shapiro L [Pubmed: 32101743] [DOI: 10.1016/j.celrep.2020.02.003] |
230.3 GB | — | |
2021-02-12 | Cryo Soft X-ray data for tetraspeck correlation [multiple data sets in MRC format] | Groen J, Pereiro E [Pubmed: 33990802] [DOI: 10.1038/s41596-021-00522-4] |
6.8 GB | — | |
2023-01-30 | 3D-surface reconstruction of cellular cryo-soft X-ray microscopy tomograms using semi-supervised deep learning [7 reconstructed volumes in MRC format] | Dyhr MCA, Sadeghi M, Moynova R, Knappe C, Kepsutlu Çakmak B, Werner S, Schneider G, McNally J, Noe F, Ewers H [DOI: 10.1101/2022.05.16.492055] |
23.5 GB | — | |
2018-01-24 | Tilt-series of e. coli carrying empty ple6 plasmid induced with 20 uM IPTG [4 tilt series in MRC format] | Swulius MT, Jensen GJ [Pubmed: 22904287] [DOI: 10.1128/JB.00505-12] |
3.8 GB | — | |
2020-07-21 | Human delta protocadherin 1 full ectodomains on membranes, tomogram 3 [multiple data sets in MRC and TIFF formats] | Harrison OJ, Brasch J, Katsamba PS, Ahlsen G, Noble AJ, Dan H, Sampogna R, Potter CS, Carragher B, Honig B, Shapiro L [Pubmed: 32101743] [DOI: 10.1016/j.celrep.2020.02.003] |
106.5 GB | — | |
2023-02-22 | Electron cryo-tomography data of HeLa cells expressing untagged Cidec [multiple data sets in MRC format] | Ganeva I, Lim K, Boulanger J, Hoffmann PC, Muriel O, Borgeaud AC, Hagen WJH, Savage DB, Kukulski W [Pubmed: 36800289] [DOI: 10.1016/j.celrep.2023.112107] |
42.8 GB | — | |
2018-01-24 | Tilt-series of e. coli carrying the ple7 plasmid carrying YFP-MreB induced with 20 uM IPTG [7 tilt series in MRC format] | Swulius MT, Jensen GJ [Pubmed: 22904287] [DOI: 10.1128/JB.00505-12] |
6.6 GB | — | |
2020-07-28 | Human delta protocadherin 10 full ectodomains on membranes, tomogram 1 [multiple data sets in TIFF and MRC formats] | Harrison OJ, Brasch J, Katsamba PS, Ahlsen G, Noble AJ, Dan H, Sampogna R, Potter CS, Carragher B, Honig B, Shapiro L [Pubmed: 32101743] [DOI: 10.1016/j.celrep.2020.02.003] |
599.5 GB | — | |
2023-02-22 | Electron cryo-tomography data of HeLa cells expressing Cidec-EGFP [multiple data sets in MRC format] | Ganeva I, Lim K, Boulanger J, Hoffmann PC, Muriel O, Borgeaud AC, Hagen WJH, Savage DB, Kukulski W [Pubmed: 36800289] [DOI: 10.1016/j.celrep.2023.112107] |
187.3 GB | — | |
2018-01-24 | Tilt-series of e. coli carrying the ple7 plasmid carrying YFP-MreB hyper-overexpressed by induction with 1uM IPTG [5 tilt series in MRC format] | Swulius MT, Jensen GJ [Pubmed: 22904287] [DOI: 10.1128/JB.00505-12] |
5.0 GB | — | |
2020-07-28 | Human delta protocadherin 10 full ectodomains on membranes, tomogram 2 [1 tilt series in MRC format] | Harrison OJ, Brasch J, Katsamba PS, Ahlsen G, Noble AJ, Dan H, Sampogna R, Potter CS, Carragher B, Honig B, Shapiro L [Pubmed: 32101743] [DOI: 10.1016/j.celrep.2020.02.003] |
104.6 GB | — | |
2021-12-14 | Identifying long-range synaptic inputs using genetically encoded labels and volume electron microscopy [6 multi-frame micrographs composed of 1 frames each in TIFF format] | Ayuso-Jimeno IP, Ronchi P, Wang T, Gallori CE, Gross CT [Pubmed: 35715545] [DOI: 10.1038/s41598-022-14309-4] |
68.7 GB | — | |
2024-05-16 | In situ cryo-electron tomography of Saccharomyces cerevisiae [37 multi-frame micrographs composed of 252 frames each in EER format] | Comet M, Dijkman PM, Boer Iwema R, Franke T, Masiulis S, Schampers R, Raschdorf O, Grollios F, Pryor Jr. EE, Drulyte I [Pubmed: 38512070] [DOI: 10.1107/S2059798324001840] |
3.1 GB | — | |
2018-02-07 | Raw 2d tomographic tilt series of a dividing cell [65 tilt series in ST format] | Otsuka S [Pubmed: 29323269] [DOI: 10.1038/s41594-017-0001-9] |
237.8 GB | — | |
2020-07-24 | Human delta protocadherin 10 full ectodomains on membranes, tomogram 3 [1 tilt series in MRC format] | Harrison OJ, Brasch J, Katsamba PS, Ahlsen G, Noble AJ, Dan H, Sampogna R, Potter CS, Carragher B, Honig B, Shapiro L [Pubmed: 32101743] [DOI: 10.1016/j.celrep.2020.02.003] |
55.1 GB | — | |
2024-05-14 | Cryo-electron tomography of keyhole limpet hemocyanin [41 multi-frame micrographs composed of 168 frames each in EER format] | Comet M, Dijkman PM, Boer Iwema R, Franke T, Masiulis S, Schampers R, Raschdorf O, Grollios F, Pryor Jr. EE, Drulyte I [Pubmed: 38512070] [DOI: 10.1107/S2059798324001840] |
3.6 GB | — | |
2022-01-12 | In vivo architecture of the polar organizing protein Z (PopZ) meshwork in the Alphaproteobacteria Magnetospirillum gryphiswaldense and Caulobacter crescentus [multiple data sets in MRC format] | Toro-Nahuelpan M, Plitzko JM, Schüler D, Pfeiffer D [Pubmed: 34971672] [DOI: 10.1016/j.jmb.2021.167423] |
6.4 GB | — | |
2023-07-18 | Targeted volume Correlative Light and Electron Microscopy of environmental marine microorganisms [1937 micrographs in TIFF format] | Mocaer K, Mizzon G, Gunkel M, Halavatyi A, Steyer AM, Oorschot V, Schorb M, Le Kieffre C, Yee DP, Chevalier F, Gallet B, Decelle J, Schwab Y, Ronchi P [DOI: 10.1101/2023.01.27.525698] |
14.5 GB | — | |
2021-11-08 | Frame-aligned tilt series of cryo-FIB-milled HEK293 cells treated with taxol [40 tilt series in MRC format] | Watanabe R, Buschauer R, Böhning J, Audagnotto M, Lasker K, Lu TW, Boassa D, Taylor S, Villa E [Pubmed: 32783917] [DOI: 10.1016/j.cell.2020.08.004] |
2.1 GB | — |