오사카 대학의 EMPIAR-PDBj 팀은, 아시아의 EM 연구자가 용량이 큰 EM 이미지를 EMPIAR 데이터베이스에 전송하는 것을 돕고 있습니다. 인터넷을 통하여 EBI (UK)에 직>접 데이터를 전송하는 대신, 이용자는 우편이나 택배를 통하여 하드 디스크를 오사카 대학으로 보내실 수 있습니다. 혹은 인터넷을 이용하여 오사카 대학의 서버로 전>송 하실 수 있습니다. 오사카 대학에 데이터 전송 서비스를 희망하시는 분은 데이터를 보내시기 전에 먼저 이메일 통하여 등록하시고 싶은 EM데이터에 관하여 상담하십시오.
Release date | Imageset | Title | Authors and references | Size | Resolution |
---|---|---|---|---|---|
2021-04-06 | CryoET dataset of T20S proteasome for testing motion-aware tilt-series alignment and 3D reconstruction [3 tilt series in MRC format] | Fernandez JJ [Pubmed: 29410148] [DOI: 10.1016/j.jsb.2018.02.001] |
5.1 GB | 9.0 Å | |
2023-04-26 | Cryo-electron tomography of ChAdOx spikes HexaPro mutant [68 tilt series in MRC format] | Ni T, Mendonca L, Zhu Y, Howe A, Radecke J, Sheng Y, Krebs AS, Shah P, Allen E, Spencer A, Morris S, Stuart D, Gilbert S, Zhang P | 240.3 GB | 9.0 - 10.6 Å | |
2021-04-14 | Cryo-electron tomography of the metazoan membrane-assembled retromer:SNX3 coat containing Wls cargo motif [multiple data sets in TIFF and MRC formats] | Leneva N, Kovtun O, Morado DR, Briggs JAG, Owen DJ [Pubmed: 33762348] [DOI: 10.1126/sciadv.abf8598] |
764.9 GB | 8.9 - 9.5 Å | |
2023-10-03 | In situ cryo-electron tomography of E. amylovora cells infected by the jumbo bacteriophage RAY [multiple data sets in TIFF format] | Prichard A, Lee J, Laughlin TG, Lee A, Thomas KP, Sy A, Spencer T, Asavavimol A, Cafferata A, Cameron M, Chiu N, Davydov D, Desai I, Diaz G, Guereca M, Hearst K, Huang L, Jacobs E, Johnson A, Kahn S, Koch R, Martinez A, Norquist M, Pau T, Prasad G, Saam K, Sandhu M, Sarabria AJ, Schumaker S, Sonin S, Sonin A, Uyeno A, Zhao A, Corbett K, Pogliano K, Meyer J, Grose JH, Villa E, Dutton R, Pogliano J [Pubmed: 36865095] [DOI: 10.1101/2023.02.24.529968] |
244.3 GB | 8.9 - 38.0 Å | |
2023-01-18 | Multishot Tomography for High-Resolution In Situ Subtomogram Averaging: E.coli cryo-FIB lamellae multishot [30 tilt series in MRC format] | Khavnekar S, Erdmann PS, Plitzko JM [Pubmed: 36343843] [DOI: 10.1016/j.jsb.2022.107911] |
90.7 GB | 8.8 Å | |
2022-07-26 | In situ cryo-electron tomography of E. coli APEC 2248 infected by Goslar [1073 tilt series in TIFF format] | Laughlin TG, Deep A, Prichard AM, Seitz C, Gu Y, Enustun E, Suslov S, Khanna K, Birkholz EA, Armbruster E, McCammon JA, Amaro RE, Pogliano J, Corbett KD, Villa E [Pubmed: 35922510] [DOI: 10.1038/s41586-022-05013-4] |
52.2 GB | 8.53 - 27.0 Å | |
2024-03-17 | Cryo-EM of HCoV-NL63 5' proximal stem-loop 5 [multiple data sets in MRC format] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38076883] [DOI: 10.1101/2023.11.22.567964] |
10.2 TB | 8.4 - 9.0 Å | |
2022-12-13 | Single particle cryo-EM dataset of the Vairimorpha necatrix 26S proteasome from sporoplasms [2658 multi-frame micrographs composed of 2700 frames each in EER format] | Jespersen N, Ehrenbolger K, Winiger RR, Svedberg D, Vossbrinck CR, Barandun J [Pubmed: 36379934] [DOI: 10.1038/s41467-022-34691-x] |
3.7 TB | 8.3 Å | |
2022-01-14 | Motion corrected micrographs - purified SINV/EEEV particles and recombinant anti-EEEV Fab (EEEV-143) [3535 micrographs in MRC format] | Williamson LE, Gilliland T, Yadav PK, Binshtein E, Bombardi R, Kose N, Nargi RS, Sutton RE, Durie CL, Armstrong E, Carnahan RH, Walker LM, Kim AS, Fox JM, Diamond MS, Ohi MD, Klimstra WB, Crowe JE [Pubmed: 33301709] [DOI: 10.1016/j.cell.2020.11.011] |
187.5 GB | 8.3 Å | |
2022-06-14 | Parallel cryo electron tomography (PACE-tomo) of 80S ribosomes in situ [multiple data sets in MRC format] | Eisenstein F, Danev R [Pubmed: 36456783] [DOI: 10.1038/s41592-022-01690-1] |
132.3 GB | 8.2 Å | |
2020-08-06 | Cryo-EM Structure of GluD1-Orphan Delta Receptor Reveals a Novel Architecture in the Ionotropic Glutamate Receptor Family [3938 multi-frame micrographs composed of 40 frames each in MRC format] | Burada AP, Vinnakota R, Kumar J [Pubmed: 31925409] [DOI: 10.1038/s41594-019-0359-y] |
6.5 TB | 8.1 Å | |
2021-09-22 | Di nucleosome fraction from metaphase chromosome in Xenopus egg extract lot1 [1386 multi-frame micrographs composed of 50 frames each in TIFF format] | Arimura YA, Funabiki HF [Pubmed: 34478647] [DOI: 10.1016/j.molcel.2021.08.010] |
825.4 GB | 8.1 Å | |
2021-09-01 | CryoEM map of designed helical fusion protein C5_HFuse-3921 [6761 multi-frame micrographs composed of 50 frames each in TIFF format] | Redler RL, Edman NI, Baker D, Ekiert D, Bhabha G [Pubmed: 33863889] [DOI: 10.1038/s41467-021-22276-z] |
2.0 TB | 8.06 Å | |
2024-01-16 | Single particle cryo-EM dataset of partially contracted cowpea chlorotic mottle virus in laser-melted and revitrified ice [7902 multi-frame micrographs composed of 40 frames each in EER format] | Harder OF, Barrass SV, Drabbels M, Lorenz UJ [Pubmed: 37704664] [DOI: 10.1038/s41467-023-41444-x] |
3.9 TB | 8.0 Å | |
2015-11-04 | In vitro assembled bacteriophage phi6 polymerase complex [stack of 798 particles in MRC format] | Ilca SL, Kotecha A, Sun X, Poranen MP, Stuart DI, Huiskonen JT [Pubmed: 26534841] [DOI: 10.1038/ncomms9843] |
8.1 GB | 7.9 Å | |
2015-10-09 | GroEL dataset - NRAMM (06jul12a) [186 micrographs in MRC format] | Stagg SM, Lander GC, Pulokas J, Fellmann D, Cheng A, Quispe JD, Mallick SP, Avila RM, Carragher B, Potter CS [Pubmed: 16762565] [DOI: 10.1016/j.jsb.2006.04.005] |
7.0 GB | 7.8 Å | |
2024-04-02 | Cryo-EM of SARS-CoV-2 5' proximal stem-loops 5-6 [multiple data sets in TIFF and MRC formats] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38427602] [DOI: 10.1073/pnas.2320493121] |
2.8 TB | 7.8 Å | |
2024-04-07 | Cryo-EM of SARS-CoV-2 5' proximal stem-loops 5-6 with SL6 extended and SL5a, SL5b, and SL5c removed [16511 multi-frame micrographs composed of 40 frames each in MRC format] | Kretsch RC, Xu L, Zheludev IN, Zhou X, Huang R, Nye G, Li S, Zhang K, Chiu W, Das R [Pubmed: 38427602] [DOI: 10.1073/pnas.2320493121] |
10.8 TB | 7.8 Å | |
2020-12-22 | Single-particle Cryo-EM of the endogenous human BAF complex alone [4865 micrographs in MRC format] | Suzuki H, Mashtalir N, Kadoch C, Walz T [Pubmed: 33053319] [DOI: 10.1016/j.cell.2020.09.051] |
258.1 GB | 7.8 Å | |
2023-05-11 | HMP1/alpha-catenin monomer [multiple data sets in TIFF and MRC formats] | Rangarajan ES, Smith EW, Izard T [Pubmed: 36539037] [DOI: 10.1016/j.jbc.2022.102817] |
7.3 TB | 7.8 Å | |
2018-07-06 | Structure of the herpes-simplex virus portal-vertex [3818 micrographs in MRC format] | McElwee M, Vijayakrishnan S, Rixon FJ, Bhella D [Pubmed: 29924793] [DOI: 10.1371/journal.pbio.2006191] |
238.6 GB | 7.7 Å | |
2020-08-19 | Subtomogram averaging and classification of SARS-CoV-2 Spike Proteins on intact virions [multiple data sets in TIFF and MRC formats] | Ke Z, Oton J, Cortese M, Zila V, Zivanov J, Lu JM, Peukes J, Scheres SHW, Briggs JAG [Pubmed: 32805734] [DOI: 10.1038/s41586-020-2665-2] |
372.4 GB | 7.7 - 9.9 Å | |
2022-01-18 | Single-particle cryoEM data of yeast Ubr1 (apo) [5912 multi-frame micrographs composed of 40 frames each in TIFF format] | Pan M, Zhao M [Pubmed: 34789879] [DOI: 10.1038/s41586-021-04097-8] |
3.2 TB | 7.69 Å | |
2023-04-11 | Human PRPH2-ROM1 oligomers [multiple data sets in TIFF format] | El Mazouni D [Pubmed: 36351012] [DOI: 10.1126/sciadv.add3677] |
6.0 TB | 7.6 - 8.2 Å | |
2021-03-19 | GluK2/K5 apo [970 multi-frame micrographs composed of 40 frames each in TIFF format] | Khanra N, Meyerson J [Pubmed: 33724189] [DOI: 10.7554/eLife.66097] |
230.4 GB | 7.5 Å |