大阪大学のEMPIAR-PDBjチームでは、アジアの電顕研究者が、EMPIARデータベースに大きな電顕画像を転送するお手伝いをしています。 ネットワークでイギリスに転送する代わりに、ハードディスク自体を郵送・宅配便で大阪大学に送付、あるいは阪大のサーバまでネットワーク転送していただければ、こちらで仲介して登録サイトへの転送を代行します。 EMPIARへの登録を希望する方で、阪大へのデータ送付・転送をご希望の方は、まず、e-mail で、登録したい電顕画像データについて、ご相談ください。
Release date | Imageset | Title | Authors and references | Size | Resolution |
---|---|---|---|---|---|
2018-10-23 | bovine liver glutamate dehydrogenase [4982 micrographs in MRC format] | Eng ET, Kelley K, Jordan KJ, Kopylov M, Carragher BO, Potter CS | 264.5 GB | 2.1 Å | |
2019-05-09 | apo-LRRC8A in MSP2N2 nanodiscs [1779 multi-frame micrographs composed of 50 frames each in MRCS format] | Kern DM [Pubmed: 30775971] [DOI: 10.7554/eLife.42636] |
739.5 GB | 4.18 Å | |
2019-01-29 | afTMEM16/nanodisc complex in the presence of Ca2+ and 5mol% Ceramide 24:0 [2145 micrographs in MRC format] | Falzone M. E., Accardi A [Pubmed: 30648972] [DOI: 10.7554/eLife.43229] |
113.8 GB | 3.59 Å | |
2019-01-29 | afTMEM16/nanodisc complex in the presence of Ca2+ [2838 micrographs in MRC format] | Falzone M. E., Accardi A [Pubmed: 30648972] [DOI: 10.7554/eLife.43229] |
150.5 GB | 4.05 Å | |
2019-01-30 | afTMEM16/nanodisc complex in the absence of Ca2+ [3054 micrographs in MRC format] | Falzone ME, Rheinberger J, Di Lorenzo A, Accardi A [Pubmed: 31278385] [DOI: 10.1038/s41586-019-1377-y] |
162.0 GB | 4.2 Å | |
2019-08-27 | Yeast postcatalytic spliceosome, two cryoEM data sets at different magnifications [multiple data sets in MRC format] | Wilkinson ME, Nagai K [Pubmed: 31478901] [DOI: 10.1107/S2059798319010519] |
6.3 TB | 3.3 Å | |
2020-08-18 | Yeast Tilt Series Collected on Lamella Generated by Fully Automated FIB Milling [1 tilt series in MRC format] | Zachs T, Schertel A, Medeiros J, Weiss GL, Hugener J, Matos J, Pilhofer M [Pubmed: 32149604] [DOI: 10.7554/eLife.52286] |
2.6 GB | 30.0 Å | |
2021-05-10 | Yeast C, Ci, C*, and P complex spliceosomes [multiple data sets in TIFF and MRCS formats] | Wilkinson ME, Fica SM, Galej WP, Nagai K [Pubmed: 27459055] [DOI: 10.1038/nature19316] |
8.9 TB | 2.8 - 10.0 Å | |
2014-11-06 | Yeast 80S Ribosome-Taura Syndrome Virus IRES complex, Frealign Input Particle Stack [stack of 416312 particles in MRC format] | Koh CS, Brilot AF, Grigorieff N, Korostelev AA [Pubmed: 24927574] [DOI: 10.1073/pnas.1406335111] |
273.6 GB | 6.1 Å | |
2014-11-06 | Yeast 80S Ribosome - tRNA- Kozak mRNA complexes, Frealign Input Particle Stack [stack of 86866 particles in MRC format] | Svidritskiy E, Brilot AF, Koh CS, Grigorieff N, Korostelev AA [Pubmed: 25043550] [DOI: 10.1016/j.str.2014.06.003] |
42.0 GB | 6.2 - 6.3 Å | |
2020-05-19 | Whole-body integration of gene expression and single-cell morphology [11416 micrographs in TIFF format] | Vergara HM, Pape C, Meechan KI, Zinchenko V, Genoud C, Wanner AA, Mutemi KN, Titze B, Templin RM, Bertucci PY, Simakov O, Dürichen W, Machado P, Savage EL, Schermelleh L, Schwab Y, Friedrich RW, Kreshuk A, Tischer C, Arendt D [Pubmed: 34380046] [DOI: 10.1016/j.cell.2021.07.017] |
1.7 TB | — | |
2021-11-12 | WT MDA5-dsRNA filaments in complex with ADP [4680 multi-frame micrographs composed of 40 frames each in TIFF format] | Yu Q, Modis Y [Pubmed: 34795277] [DOI: 10.1038/s41467-021-27062-5] |
791.8 GB | 3.4 - 3.9 Å | |
2016-11-10 | Volta phase plate with defocus cryo-EM dataset of Thermoplasma acidophilum 20S proteasome [427 multi-frame micrographs composed of 24 frames each in TIFF format] | Danev R, Tegunov D, Baumeister W [Pubmed: 28109158] [DOI: 10.1101/085530] |
92.5 GB | 2.2 - 2.4 Å | |
2016-03-16 | Volta phase plate in-focus dataset of T20S proteasome [158 multi-frame micrographs composed of 12 frames each in MRC format] | Danev R, Baumeister W [Pubmed: 26949259] [DOI: 10.7554/eLife.13046] |
50.3 GB | 3.2 Å | |
2018-01-26 | Volta phase plate data collection facilitates image processing and cryo-EM structure determination [435 multi-frame micrographs composed of 30 frames each in TIFF format] | von Loeffelholz O, Klaholz BP [Pubmed: 29337113] [DOI: 10.1016/j.jsb.2018.01.003] |
89.4 GB | 4.4 Å | |
2018-01-25 | Volta phase plate data collection facilitates image processing and cryo-EM structure determination [318 multi-frame micrographs composed of 30 frames each in TIFF format] | von Loeffelholz O, Klaholz BP [Pubmed: 29337113] [DOI: 10.1016/j.jsb.2018.01.003] |
64.0 GB | 3.9 Å | |
2018-01-31 | Volta phase plate data collection facilitates image processing and cryo-EM structure determination [219 multi-frame micrographs composed of 30 frames each in TIFF format] | von Loeffelholz O, Klaholz BP [Pubmed: 29337113] [DOI: 10.1016/j.jsb.2018.01.003] |
45.9 GB | 4.6 Å | |
2016-02-04 | Volta phase plate cryo-EM of the small protein complex Prx3 [multiple data sets in MRC and dat formats] | Khoshouei MK [Pubmed: 26817416] [DOI: 10.1038/ncomms10534] |
612.5 GB | 4.4 Å | |
2015-02-26 | VipA/VipB, sheath of the bacterial type IV secretion system, micrographs for helical reconstruction taken on a K2 detector [77 micrographs in MRC format] | Kudryashev M, Wang R, Brackmann M, Scherer S, Maier T, DiMaio F, Baker D, Stahlberg H, Egelman EH, Basler M [Pubmed: 25723169] [DOI: 10.1016/j.cell.2015.01.037] |
4.1 GB | 3.5 Å | |
2023-05-22 | Venous puncture wound thrombi, 1, 5, 20 min post-puncture, 100 nm XY raw images, 20 nm XY pixels every 20 micons, 3 nm wide area TEM montages at selected depth [15 multi-frame micrographs composed of 1 frames each in DM4 format] | Storrie B, Leapman RD [Pubmed: 34531522] [DOI: 10.1038/s42003-021-02615-y] |
381.2 GB | — | |
2016-08-15 | VPP subtomogram averaging [11 class averages in MRC format] | Khoshouei M, Pfeffer S, Baumeister W, Foerster F, Danev R [Pubmed: 27235783] [DOI: 10.1016/j.jsb.2016.05.009] |
33.9 GB | 9.6 Å | |
2021-11-08 | VHUT-cryo-FIB, a method to fabricate frozen-hydrated lamella of tissue specimen for in situ cryo-electron tomography [13 multi-frame micrographs composed of 30 frames each in TIFF format] | Zhang J [Pubmed: 34174447] [DOI: 10.1016/j.jsb.2021.107763] |
112.1 GB | 18.0 Å | |
2024-03-19 | Unveiling the ultrastructural landscape of extracellular matrix via lift-out cryo-FIBSEM and cryo-ET [multiple data sets in TIFF and MRC formats] | Zens B., Fäßler F., Hansen J.M., Hauschild R., Datler J., Hodirnau V.V., Zheden V., Alanko J., Sixt M., Schur F.K.M. [DOI: 10.1083/jcb.202309125] |
183.0 GB | — | |
2017-05-15 | Untilted Single-Particle CryoEM of Highly Preferred Orientated Influenza Hemagglutinin Trimer [multiple data sets in MRC format] | Tan YZ, Lyumkis D [Pubmed: 28671674] [DOI: 10.1038/nmeth.4347] |
1.2 TB | 4.2 Å | |
2016-07-06 | Unsupervised single-particle deep classification via statistical manifold learning [multiple data sets in MRC format] | Wu J, Ma YB, Congdon C, Brett B, Chen S, Xu Y, Ouyang Q, Mao Y | 28.2 GB | — |