Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2023-03-30 |  |
mouse ACE2 receptor bound to SARS-CoV-2 variant Omicron BA.4/5 Spike [7989 multi-frame micrographs composed of 1092 frames each in EER format] | Ni D, Myasnikov A, Stahlberg S, Lau K [DOI: 10.1371/journal.ppat.1011206] |
4.4 TB | 2.92 - 3.3 Å |
| 2022-09-09 |  |
Human NTCP in complex with YN69083 Fab [multiple data sets in TIFF format] | Park JH, Iwamoto M, Yun JH, Uchikubo-Kamo T, Son D, Jin Z, Yoshida H, Ohki M, Ishimoto N, Mizutani K, Oshima M, Muramatsu M, Wakita T, Shirouzu M, Liu K, Uemura T, Nomura N, Iwata S, Watashi K, Tame JRH, Nishizawa T, Lee W, Park SY [Pubmed: 35580630] [DOI: 10.1038/s41586-022-04857-0] |
5.5 TB | 3.3 Å |
| 2023-03-13 |  |
mouse ACE2 receptor bound to SARS-CoV-2 variant Omicron BA.1 Spike [20892 multi-frame micrographs composed of 1568 frames each in EER format] | Ni D, Myasnikov A, Stahlberg S, Lau K [DOI: 10.1371/journal.ppat.1011206] |
10.6 TB | 3.03 - 3.22 Å |
| 2023-03-27 |  |
mouse ACE2 receptor bound to SARS-CoV-2 variant Omicron BA.2.12.1 Spike [8046 multi-frame micrographs composed of 945 frames each in EER format] | Ni D, Myasnikov A, Stahlberg S, Lau K [DOI: 10.1371/journal.ppat.1011206] |
4.0 TB | 2.89 - 3.03 Å |
| 2023-03-27 |  |
mouse ACE2 receptor bound to SARS-CoV-2 variant Beta Spike [5671 multi-frame micrographs composed of 40 frames each in MRC format] | Ni D, Myasnikov A, Stahlberg S, Lau K [DOI: 10.1371/journal.ppat.1011206] |
3.8 TB | 4.4 Å |
| 2022-09-09 |  |
Cryo-electron microscopy of human exostosin-like 3 (EXTL3) in the presence of UDP [2573 multi-frame micrographs composed of 1 frames each in MRC format] | Wilson LFL, Dendooven T, Hardwick SW, Echevarría-Poza A, Tryfona T, Krogh KBRM, Chirgadze DY, Luisi BF, Logan DT, Mani K, Dupree P [Pubmed: 35676258] [DOI: 10.1038/s41467-022-31048-2] |
669.8 GB | 2.93 Å |
| 2022-10-31 |  |
cryoEM structure of Gq-coupled MRGPRX1 with peptide agonist BAM8-22 [3801 micrographs in MRC format] | Liu Y, Cao C, Huang XP, Gumpper RH, Rachman MM, Shih SL, Krumm BE, Zhang S, Shoichet BK, Fay JF, Roth BL [Pubmed: 36302898] [DOI: 10.1038/s41589-022-01173-6] |
333.7 GB | 2.87 Å |
| 2022-12-09 |  |
CryoEM structure of hM4Di-miniGo in complex with DCZ [2982 micrographs in MRC format] | Fay J, Roth B, Zhang S [Pubmed: 36450989] [DOI: 10.1038/s41586-022-05489-0] |
261.8 GB | 2.7 Å |
| 2022-12-09 |  |
CryoEM structure of hM3Dq-miniGq in complex with DCZ [3234 micrographs in MRC format] | Fay J, Roth B, Zhang S [Pubmed: 36450989] [DOI: 10.1038/s41586-022-05489-0] |
284.0 GB | 2.69 Å |
| 2022-09-09 |  |
S. cerevisiae Gea2 [multiple data sets in TIFF format] | Muccini AJ, Fromme JC [Pubmed: 36044848] [DOI: 10.1016/j.celrep.2022.111282] |
7.4 TB | 3.9 - 4.7 Å |
| 2022-09-09 |  |
Cryo-electron microscopy of human exostosin-like 3 (EXTL3) [1626 multi-frame micrographs composed of 70 frames each in MRC format] | Wilson LFL, Dendooven T, Hardwick SW, Echevarría-Poza A, Tryfona T, Krogh KBRM, Chirgadze DY, Luisi BF, Logan DT, Mani K, Dupree P [Pubmed: 35676258] [DOI: 10.1038/s41467-022-31048-2] |
3.5 TB | 2.43 Å |
| 2022-10-31 |  |
cryoEM structure of Gq-coupled MRGPRX1 with peptide agonist BAM8-22 & ML382 [2495 micrographs in MRC format] | Liu Y, Cao C, Huang XP, Gumpper RH, Rachman MM, Shih SL, Krumm BE, Zhang S, Shoichet BK, Fay JF, Roth BL [Pubmed: 36302898] [DOI: 10.1038/s41589-022-01173-6] |
219.1 GB | 2.87 Å |
| 2022-09-07 |  |
Gea2-Arf1 complex [2798 multi-frame micrographs composed of 100 frames each in TIFF format] | Muccini AJ, Fromme JC [Pubmed: 36044848] [DOI: 10.1016/j.celrep.2022.111282] |
2.3 TB | 3.8 - 4.2 Å |
| 2023-02-01 |  |
Mycobacterium phage Che8 [1203 multi-frame micrographs composed of 30 frames each in TIFF format] | Podgorski JM [Pubmed: 36649709] [DOI: 10.1016/j.str.2022.12.012] |
763.1 GB | 2.5 Å |
| 2022-10-31 |  |
cryoEM structure of Gq-coupled MRGPRX1 with Compound-16 [3281 micrographs in MRC format] | Liu Y, Cao C, Huang XP, Gumpper RH, Rachman MM, Shih SL, Krumm BE, Zhang S, Shoichet BK, Fay JF, Roth BL [Pubmed: 36302898] [DOI: 10.1038/s41589-022-01173-6] |
288.1 GB | 2.71 - 3.25 Å |
| 2022-09-23 |  |
CryoEM structure of the A.aeolicus WzmWzt transporter bound to the native O antigen [4604 multi-frame micrographs composed of 40 frames each in TIFF format] | Spellmon N [Pubmed: 36064941] [DOI: 10.1038/s41467-022-32597-2] |
1.2 TB | 3.2 Å |
| 2022-12-09 |  |
CryoEM structure of hM3Dq-miniGq in complex with CNO [3577 micrographs in MRC format] | Fay J, Roth B, Zhang S [Pubmed: 36450989] [DOI: 10.1038/s41586-022-05489-0] |
314.1 GB | 2.79 Å |
| 2022-12-09 |  |
CryoEM structure of hM3R-miniGq in complex with Iperoxo [2858 micrographs in MRC format] | Fay J, Roth B, Zhang S [Pubmed: 36450989] [DOI: 10.1038/s41586-022-05489-0] |
250.9 GB | 2.56 Å |
| 2023-03-02 |  |
Gordonia phage Ziko [5058 multi-frame micrographs composed of 30 frames each in TIFF format] | Podgorski JM [Pubmed: 36649709] [DOI: 10.1016/j.str.2022.12.012] |
1.4 TB | 2.6 Å |
| 2022-09-23 |  |
CryoEM structure of the nucleotide-free and open channel A.aeolicus WzmWzt transporter [3048 multi-frame micrographs composed of 40 frames each in TIFF format] | Spellmon N [Pubmed: 36064941] [DOI: 10.1038/s41467-022-32597-2] |
776.8 GB | 4.1 Å |
| 2022-09-23 |  |
CryoEM structure of the A.aeolicus WzmWzt transporter bound to 3-O-methyl-D-mannose [3799 multi-frame micrographs composed of 40 frames each in TIFF format] | Spellmon N [Pubmed: 36064941] [DOI: 10.1038/s41467-022-32597-2] |
1.0 TB | 3.7 Å |
| 2023-10-03 |  |
In situ cryo-electron tomography of E. amylovora cells infected by the jumbo bacteriophage RAY [multiple data sets in TIFF format] | Prichard A, Lee J, Laughlin TG, Lee A, Thomas KP, Sy A, Spencer T, Asavavimol A, Cafferata A, Cameron M, Chiu N, Davydov D, Desai I, Diaz G, Guereca M, Hearst K, Huang L, Jacobs E, Johnson A, Kahn S, Koch R, Martinez A, Norquist M, Pau T, Prasad G, Saam K, Sandhu M, Sarabria AJ, Schumaker S, Sonin S, Sonin A, Uyeno A, Zhao A, Corbett K, Pogliano K, Meyer J, Grose JH, Villa E, Dutton R, Pogliano J [Pubmed: 36865095] [DOI: 10.1101/2023.02.24.529968] |
244.3 GB | 8.9 - 38.0 Å |
| 2023-04-14 |  |
Thermostabilized human prestin in complex with chloride, sulfate or salicylate [multiple data sets in TIFF format] | Futamata H, Fukuda M, Umeda R, Yamashita K, Tomita A, Takahashi S, Shikakura T, Hayashi S, Kusakizako T, Nishizawa T, Homma K, Nureki O [Pubmed: 36266333] [DOI: 10.1038/s41467-022-34017-x] |
3.5 TB | 3.52 - 3.63 Å |
| 2023-02-01 |  |
Mycobacterium phage Bobi [1915 multi-frame micrographs composed of 30 frames each in TIFF format] | Podgorski JM [Pubmed: 36649709] [DOI: 10.1016/j.str.2022.12.012] |
1.2 TB | 2.5 Å |
| 2022-09-23 |  |
CryoEM structure of the A.aeolicus WzmWzt transporter in the presence of the native O antigen and ATP [8625 multi-frame micrographs composed of 40 frames each in TIFF format] | Spellmon N [Pubmed: 36064941] [DOI: 10.1038/s41467-022-32597-2] |
2.2 TB | 3.3 - 3.5 Å |
