Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2025-04-24 |  |
Human pseudouridine synthase 3 (PUS3 K119A) [8292 multi-frame micrographs composed of 40 frames each in TIFF format] | Koziej L, Lin T-Y, Glatt S, Jezowski J [Pubmed: 38996458] [DOI: 10.1016/j.molcel.2024.06.013] |
3.2 TB | 5.15 Å |
| 2025-04-09 |  |
Human pseudouridine synthase 3 (PUS3 D118A mutant) and tRNA-Arg [8736 multi-frame micrographs composed of 41 frames each in TIFF format] | Koziej L, Lin T-Y, Glatt S, Jezowski J [Pubmed: 38996458] [DOI: 10.1016/j.molcel.2024.06.013] |
3.3 TB | 3.15 Å |
| 2025-04-09 |  |
Human pseudouridine synthase 3 (PUS3 D118A mutant) and pre-tRNA-Arg [8673 multi-frame micrographs composed of 40 frames each in TIFF format] | Koziej L, Lin T-Y, Glatt S, Jezowski J [Pubmed: 38996458] [DOI: 10.1016/j.molcel.2024.06.013] |
3.3 TB | 2.97 Å |
| 2019-09-30 |  |
Human pre-B spliceosome and U4/U6.U5 tri-snRNP [multiple data sets in MRC and MRCS formats] | Charenton C, Wilkinson ME, Nagai K [Pubmed: 30975767] [DOI: 10.1126/science.aax3289] |
2.3 TB | 2.9 - 28.0 Å |
| 2024-11-21 |  |
Human platelets in presence of SARS-CoV-2 spike protein [6 reconstructed volumes in MRC format] | Basnet N, Bodakuntla S, Nichols S, Martinez-Sanchez A, Agostini L, Soh YM, Takagi J, Biertumpfel C, Mizuno N [Pubmed: 36739444] [DOI: 10.1038/s41467-023-36279-5] |
15.3 GB | — |
| 2024-04-24 |  |
Human methylenetetrahydrofolate reductase plus SAM [multiple data sets in EER format] | Blomgren LKM, Basle A, McCorvie TJ [DOI: 10.1038/s41467-024-47174-y] |
1012.6 GB | 2.91 Å |
| 2024-05-14 |  |
Human methylenetetrahydrofolate reductase plus SAH [multiple data sets in EER format] | Blomgren LKM, Basle A, McCorvie TJ [Pubmed: 38622112] [DOI: 10.1038/s41467-024-47174-y] |
2.6 TB | 2.8 - 3.14 Å |
| 2019-03-18 |  |
Human methemoglobin movies obtained using Talos Arctica operating at 200 kV equipped with a K2 [1665 multi-frame micrographs composed of 44 frames each in MRC format] | Herzik Jr MA, Wu M, Lander GC [Pubmed: 30833564] [DOI: 10.1038/s41467-019-08991-8] |
1.9 TB | 2.8 - 3.2 Å |
| 2023-01-19 |  |
Human heparan sulfate polymerase complex EXT1-EXT2 [7046 micrographs in MRC format] | Leisico F, Omeiri J, Hons M, Schoehn G, Lortat-Jacob H, Wild R [Pubmed: 36402845] [DOI: 10.1038/s41467-022-34882-6] |
618.7 GB | 2.8 Å |
| 2024-08-13 |  |
Human haemoglobin in oxy form [9002 multi-frame micrographs composed of 55 frames each in TIFF format] | Takahashi K, Lee Y, Nishizawa T, Tame JRH [Pubmed: 39090102] [DOI: 10.1038/s41467-024-49947-x] |
1.4 TB | 2.27 Å |
| 2024-08-14 |  |
Human haemoglobin in deoxy form [multiple data sets in TIFF format] | Takahashi K, Lee Y, Nishizawa T, Tame JRH [Pubmed: 39090102] [DOI: 10.1038/s41467-024-49947-x] |
2.7 TB | 2.35 Å |
| 2024-08-13 |  |
Human haemoglobin in carbonmonoxy form [8994 multi-frame micrographs composed of 56 frames each in TIFF format] | Takahashi K, Lee Y, Nishizawa T, Tame JRH [Pubmed: 39090102] [DOI: 10.1038/s41467-024-49947-x] |
1.5 TB | 2.24 Å |
| 2023-07-25 |  |
Human dimeric alpha-catenin binding to F-actin [multiple data sets in MRC and TIFF formats] | Rangarajan ES, Smith EW, Izard T [Pubmed: 36928388] [DOI: 10.1038/s42003-023-04610-x] |
10.6 TB | 2.7 - 2.77 Å |
| 2020-07-24 |  |
Human delta protocadherin 10 full ectodomains on membranes, tomogram 3 [1 tilt series in MRC format] | Harrison OJ, Brasch J, Katsamba PS, Ahlsen G, Noble AJ, Dan H, Sampogna R, Potter CS, Carragher B, Honig B, Shapiro L [Pubmed: 32101743] [DOI: 10.1016/j.celrep.2020.02.003] |
55.1 GB | — |
| 2020-07-28 |  |
Human delta protocadherin 10 full ectodomains on membranes, tomogram 2 [1 tilt series in MRC format] | Harrison OJ, Brasch J, Katsamba PS, Ahlsen G, Noble AJ, Dan H, Sampogna R, Potter CS, Carragher B, Honig B, Shapiro L [Pubmed: 32101743] [DOI: 10.1016/j.celrep.2020.02.003] |
104.6 GB | — |
| 2020-07-28 |  |
Human delta protocadherin 10 full ectodomains on membranes, tomogram 1 [multiple data sets in TIFF and MRC formats] | Harrison OJ, Brasch J, Katsamba PS, Ahlsen G, Noble AJ, Dan H, Sampogna R, Potter CS, Carragher B, Honig B, Shapiro L [Pubmed: 32101743] [DOI: 10.1016/j.celrep.2020.02.003] |
599.5 GB | — |
| 2020-07-21 |  |
Human delta protocadherin 1 full ectodomains on membranes, tomogram 3 [multiple data sets in MRC and TIFF formats] | Harrison OJ, Brasch J, Katsamba PS, Ahlsen G, Noble AJ, Dan H, Sampogna R, Potter CS, Carragher B, Honig B, Shapiro L [Pubmed: 32101743] [DOI: 10.1016/j.celrep.2020.02.003] |
106.5 GB | — |
| 2020-10-09 |  |
Human delta protocadherin 1 full ectodomains on membranes, tomogram 2 [multiple data sets in TIFF, JPEG and MRC formats] | Harrison OJ, Brasch J, Katsamba PS, Ahlsen G, Noble AJ, Dan H, Sampogna R, Potter CS, Carragher B, Honig B, Shapiro L [Pubmed: 32101743] [DOI: 10.1016/j.celrep.2020.02.003] |
230.3 GB | — |
| 2020-07-24 |  |
Human delta protocadherin 1 full ectodomains on membranes, tomogram 1 [multiple data sets in MRC format] | Harrison OJ, Brasch J, Katsamba PS, Ahlsen G, Noble AJ, Dan H, Sampogna R, Potter CS, Carragher B, Honig B, Shapiro L [Pubmed: 32101743] [DOI: 10.1016/j.celrep.2020.02.003] |
247.7 GB | — |
| 2023-02-01 |  |
Human cytoplasmic dynein bound to Lis1 [multiple data sets in TIFF format] | Reimer JM, DeSantis ME, Reck-Peterson SL, Leschziner AE [Pubmed: 36692009] [DOI: 10.7554/eLife.84302] |
983.3 GB | 3.97 - 4.0 Å |
| 2024-08-28 |  |
Human calcium homeostasis modulator 1 (CALHM1) channel, I109W point mutation in complex with ruthenium red [multiple data sets in TIFF format] | Syrjanen JL, Furukawa H [Pubmed: 37380652] [DOI: 10.1038/s41467-023-39388-3] |
4.6 TB | 3.91 - 4.73 Å |
| 2024-08-28 |  |
Human calcium homeostasis modulator 1 (CALHM1) channel, I109W point mutation [8664 multi-frame micrographs composed of 30 frames each in TIFF format] | Syrjanen JL, Furukawa H [Pubmed: 37380652] [DOI: 10.1038/s41467-023-39388-3] |
1.8 TB | 2.8 Å |
| 2024-08-29 |  |
Human calcium homeostasis modulator 1 (CALHM1) channel [3285 multi-frame micrographs composed of 30 frames each in TIFF format] | Syrjanen JL, Furukawa H [Pubmed: 37380652] [DOI: 10.1038/s41467-023-39388-3] |
553.5 GB | 3.76 Å |
| 2018-07-27 |  |
Human apo-ferritin reconstructed in RELION-3.0 [1255 multi-frame micrographs composed of 40 frames each in TIFF format] | Zivanov J, Nakane T, Hagen WJH, Scheres SHW [Pubmed: 30412051] [DOI: 10.7554/eLife.42166] |
191.5 GB | 1.65 Å |
| 2021-08-13 |  |
Human apo ferritin frozen on TEM grid with amorphous carbon supporting film [743 multi-frame micrographs composed of 32 frames each in TIFF format] | Huang X, Zhang L, Wen Z, Chen H, Li S, Ji G, Yin CC, Sun F [Pubmed: 32758492] [DOI: 10.1016/j.pbiomolbio.2020.07.009] |
226.5 GB | 2.6 Å |
