Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
Due to a storage failure, some data files are currently inaccessible.
We are working to restore access, but if you need the data urgently, please use EMPIAR-EBI.
We are restoring lost files from backups in the following order:
We apologize for the inconvenience and appreciate your understanding.
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2026-02-26 |  |
FIB-SEM imaging of control HeLa cells, cells expressing WT STARD3, and cells expressing the STARD3 FA/YA mutant [multiple data sets in TIFF format] | Eichler J, Hanss V, Alpy F [Pubmed: 41741634] [DOI: 10.1038/s44318-026-00705-3] |
10.3 GB | — |
| 2025-06-15 |  |
Scan 5 part 1 according to material & methods [1229 micrographs in TIFF format] | Heß M [Pubmed: 40390032] [DOI: 10.1186/s12915-025-02242-7] |
10.3 GB | — |
| 2022-05-03 |  |
In situ single particle classification reveals distinct 60S maturation intermediates in cells [multiple data sets in MRC format] | Lucas BA, Zhang K, Loerch S, Grigorieff N [DOI: 10.1101/2022.04.10.487797] |
10.5 GB | — |
| 2014-06-19 |  |
Cryo-electron tomography average of an C1-IgG complex [27 class averages in MRC format] | Diebolder CA, Beurskens FJ, de Jong RN, Koning RI, Strumane K, Lindorfer MA, Voorhorst M, Ugurlar D, Rosati S, Heck AJR, van de Winkel JGJ, Wilson IA, Koster AJ, Taylor RP, Ollmann-Saphire E, Burton DR, Schuurman J, Gros P, Parren PWHI [Pubmed: 24626930] [DOI: 10.1126/science.1248943] |
10.8 GB | 66.0 Å |
| 2023-03-17 |  |
Serial section electron tomography of a Leishmania haptomonad-like cell attached to plastic [718 multi-frame micrographs composed of 1 frames each in MRC format] | Yanase R, Sunter JD [DOI: 10.1101/2022.10.28.514187] |
10.8 GB | — |
| 2025-06-30 |  |
FIB-SEM Trypanosoma cruzi cell samples [multiple data sets in TIFF and PNG formats] | Slamková D., Hurník Konečná T, Sviben S | 10.8 GB | — |
| 2025-12-07 |  |
Cryogenic electron tomography reveals helical organization of lipoprotein lipase in storage vesicles [19 stitched maps in MRC format] | Gunn KH, Wheless A, Neher SB [Pubmed: 40768583] [DOI: 10.1126/sciadv.adx8711] |
10.8 GB | 32.0 Å |
| 2017-11-30 |  |
FIB-SEM of a dividing cell at 11.2 min after anaphase onset [777 multi-frame micrographs composed of 1 frames each in TIFF format] | Otsuka S, Steyer AM, Schorb M, Heriche JK, Hossain MJ, Sethi S, Kueblbeck M, Schwab Y, Beck M, Ellenberg J [DOI: 10.1038/s41594-017-0001-9] |
11.0 GB | — |
| 2021-07-07 |  |
Locating Macromolecular Assemblies in Cells by 2D Template Matching with cisTEM [multiple data sets in MRC format] | Lucas BA, Himes BA, Xue L, Grant T, Mahamid J, Grigorieff N [Pubmed: 34114559] [DOI: 10.7554/eLife.68946] |
11.0 GB | 20.0 Å |
| 2025-12-12 |  |
Cryo electron tomography of HIV-1 cores isolated by sedimentation through sucrose gradient [14 tilt series in TIFF format] | Nans A, Chenavier F, Hope J, Zhang P, Cherepanov P | 11.0 GB | 12.56 Å |
| 2026-04-27 |  |
Unbend:Local correction of beam-induced sample motion in cryo-EM images using 3D spline model [1 multi-frame micrographs composed of 30 frames each in TIFF format] | Lingli Kong XZ, Johannes Elferich JE, Ximena Zottig XZ, Nikolaus Grigorieff NG | 11.0 GB | — |
| 2024-11-06 |  |
Array Tomography of zebrafish axillary lymphoid organ - an external, experimentally accessible immune organ in the zebrafish [multiple data sets in TIFF format] | Castranova D, Dell CW, Narayan K, Weinstein BM [DOI: 10.1101/2024.07.25.605139] |
11.4 GB | — |
| 2025-06-09 |  |
Scan 4b according to material & methods [319 micrographs in TIFF format] | Heß M [Pubmed: 40390032] [DOI: 10.1186/s12915-025-02242-7] |
11.4 GB | — |
| 2024-09-26 |  |
SBF SEM images of a notoroid in transverse orientation (Fig S24) [multiple data sets in DM4 and TIFF formats] | Marie-Charlotte Domart MCD, Lucy M Collinson LMC [DOI: 10.1038/s41586-024-08332-w] |
11.5 GB | — |
| 2016-01-27 |  |
Cryo-electron tomogram of host-free Chlamydia trachomatis with type III secretion system [1 class averages in MRC format] | Nans A, Kudryashev M, Saibil HR, Hayward RD [Pubmed: 26656452] [DOI: 10.1038/ncomms10114] |
11.6 GB | 33.0 Å |
| 2020-09-11 |  |
Human Parainfluenza Virus Fusion Complex Glycoproteins Imaged In Action On Authentic Viral Surfaces [2 tilt series in MRC format] | Marcink TC, Wang T, des Georges A, Porotto M, Moscona A [Pubmed: 32956394] [DOI: 10.1371/journal.ppat.1008883] |
11.6 GB | 17.18 Å |
| 2023-01-03 |  |
Cryo electron tomography of Ca. L. ossiferum [multiple data sets in MRC format] | Wollweber F, Xu J [Pubmed: 36544020] [DOI: 10.1038/s41586-022-05550-y] |
11.6 GB | 11.7 - 24.5 Å |
| 2014-01-03 |  |
2D crystal images of the potassium channel MloK1 with and without cAMP ligand [multiple data sets in TIFF format] | Kowal J, Chami M, Baumgartner P, Arheit M, Chiu P-L, Rangl M, Scheuring S, Schroeder GF, Nimigean CM, Stahlberg H [Pubmed: 24469021] [DOI: 10.1038/ncomms4106] |
11.6 GB | 7.0 Å |
| 2026-03-17 |  |
FIB-SEM of 2-cell-stage like cells (2CLC) in mouse embryonic stem cells (mESC) [multiple data sets in MRC format] | Ruiz S, Narayan K | 11.8 GB | — |
| 2019-05-08 |  |
Integrative structure and functional anatomy of a nuclear pore complex [multiple data sets in TIFF format] | Kim SJ, Fernandez-Martinez J, Nudelman I, Shi Y, Zhang W, Raveh B, Herricks T, Slaughter BD, Hogan JA, Upla P, Chemmama IE, Pellarin R, Echeverria I, Shivaraju M, Chaudhury AS, Wang J, Williams R, Unruh JR, Greenberg CH, Jacobs EY, Yu Z, de la Cruz MJ, Mironska R, Stokes DL, Aitchison JD, Jarrold MF, Gerton JL, Ludtke SJ, Akey CW, Chait BT, Sali A, Rout MP [Pubmed: 29539637] [DOI: 10.1038/nature26003] |
11.8 GB | 28.0 Å |
| 2019-10-04 |  |
Single particle cryo-EM dataset of clathrin cages with phase flipping suitable for refinement [stack of 12785 particles in MRCS format] | Morris KL, Jones JR, Halebian M, Wu S, Baker M, Armache JP, Avila Ibarra A, Sessions RB, Cameron AD, Cheng Y, Smith CJ [Pubmed: 31582853] [DOI: 10.1038/s41594-019-0292-0] |
11.9 GB | 9.07 - 23.68 Å |
| 2022-11-11 |  |
Cryo-electron tomography of microtubules assembled in Xenopus egg cytoplasmic extracts [6 tilt series in MRC format] | Guyomar C, Bousquet C, Ku S, Heumann J, Guilloux G, Gaillard N, Heichette C, Duchesne L, Steinmetz MO, Gibeaux R, Chrétien D [Pubmed: 36503602] [DOI: 10.7554/eLife.83021] |
12.1 GB | 43.3 Å |
| 2017-12-18 |  |
CryoET of T20S proteasome single particle [multiple data sets in MRC format] | Dandey VP, Wei H, Brasch J, Chase J, Acharya P, Tan YZ, Zhang Z, Kim LY, Scapin G, Rapp M, Eng ET, Rice MJ, Cheng A, Negro CJ, Shapiro L, Kwong PD, Jeruzalmi D, des Georges A, Potter CS, Carragher B [Pubmed: 29809143] [DOI: 10.7554/eLife.34257] |
12.4 GB | — |
| 2022-12-13 |  |
Focused ion beam-scanning electron microscopy links pathological myelin outfoldings to axonal changes in mice lacking Plp1 or Mag [940 micrographs in TIFF format] | Steyer AM, Möbius W [Pubmed: 36354016] [DOI: 10.1002/glia.24290] |
12.5 GB | — |
| 2021-04-23 |  |
Cryo-electron tomography of HIV-1 GagdeltaMASP1T8I assemblies [5 tilt series in MRC format] | Ni T, Frosio T, Mendonça L, Sheng Y, Clare D, Himes BA, Zhang P [Pubmed: 35022621] [DOI: 10.1038/s41596-021-00648-5] |
12.8 GB | 4.5 Å |
