Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2022-02-04 |  |
Nudaurelia capensis omega virus capsid: virus-like particles expressed in Nicotiana benthamiana [multiple data sets in MRC format] | Castells-Graells R, Ribeiro JRS, Domitrovic T, Hesketh EL, Scarff CA, Johnson JE, Ranson NA, Lawson DM, Lomonossoff GP [Pubmed: 34031522] [DOI: 10.1038/s42003-021-02134-w] |
3.4 TB | 2.72 Å |
| 2020-11-24 |  |
Krios G4 apoferritin test with K3/BioQuantum SerialEM BIS 3x3x1 [2391 multi-frame micrographs composed of 76 frames each in TIFF format] | Danev R [Pubmed: 33969878] [DOI: 10.1093/jmicro/dfab016] |
659.0 GB | 1.31 Å |
| 2021-02-10 |  |
Cryo EM strutcture of the full-length WzmWzt ABC transporter required for lipid-linked O antigen transport [5938 multi-frame micrographs composed of 31 frames each in TIFF format] | Zimmer J, Caffalette CA [Pubmed: 33443152] [DOI: 10.1073/pnas.2016144118] |
2.2 TB | 3.6 Å |
| 2021-04-14 |  |
Interleukin-10 signaling complex with IL-10RA and IL-10RB [9454 multi-frame micrographs composed of 50 frames each in TIFF format] | Saxton RA, Tsutsumi N, Gati C, Garcia KC [Pubmed: 33737461] [DOI: 10.1126/science.abc8433] |
5.4 TB | 3.5 Å |
| 2020-12-04 |  |
Cryo-EM Structure of PSII at 1.95 angstrom resolution [2160 multi-frame micrographs composed of 50 frames each in TIFF format] | Kato K, Miyazaki N, Hamaguchi T, Nakajima Y, Akita F, Yonekura K, Shen J [Pubmed: 33753866] [DOI: 10.1038/s42003-021-01919-3] |
427.6 GB | 1.95 Å |
| 2022-02-01 |  |
Nudaurelia capensis omega virus procapsid: virus-like particles expressed in Nicotiana benthamiana [multiple data sets in MRC format] | Castells-Graells R, Ribeiro JRS, Domitrovic T, Hesketh EL, Scarff CA, Johnson JE, Ranson NA, Lawson DM, Lomonossoff GP [Pubmed: 34031522] [DOI: 10.1038/s42003-021-02134-w] |
1.0 TB | 6.63 Å |
| 2021-04-30 |  |
FIB-SEM of Tuwongella immobilis - a species of the Planctomycetes phylum [1 multi-frame micrographs composed of 464 frames each in TIFF format] | Andersson SGE, Odelgard A, Dyrhage K, Mahajan M, Seeger C [DOI: 10.3389/fmicb.2021.643045] |
6.7 GB | — |
| 2021-04-30 |  |
FIB-SEM of Gemmata obscuriglobus - a species of the Planctomycetes phylum [1 stitched maps in TIFF format] | Seeger C, Dyrhage K, Mahajan M, Odelgard A, Bergström Lind S, Andersson SGE [DOI: 10.3389/fmicb.2021.643045] |
1.6 GB | — |
| 2020-11-20 |  |
Architecture of a catalytically active homotrimeric plant cellulose synthase complex [multiple data sets in TIFF format] | Purushotham PP, Ho RH, Zimmer JZ [Pubmed: 32646917] [DOI: 10.1126/science.abb2978] |
3.4 TB | 3.5 Å |
| 2020-12-04 |  |
Adeno-Associated Virus (AAV-DJ)-Cryo-EM Structure at 1.56 Å Resolution [2241 multi-frame micrographs composed of 200 frames each in TIFF format] | Yoshioka C [Pubmed: 33092282] [DOI: 10.3390/v12101194] |
2.8 TB | 1.56 Å |
| 2020-12-04 |  |
Structure of the class D GPCR Ste2 dimer coupled to two G proteins [multiple data sets in MRC and TIFF formats] | Velazhahan V, Ma N, Pándy-Szekeres G, Kooistra AJ, Lee Y, Gloriam DE, Vaidehi N, Tate CG [Pubmed: 33268889] [DOI: 10.1038/s41586-020-2994-1] |
1.3 TB | 3.3 Å |
| 2021-03-24 |  |
Jack bean urease imaged at 39kX nominal magnification [286 multi-frame micrographs composed of 50 frames each in TIFF format] | Feathers JR, Spoth KA, Fromme JC [Pubmed: 33817625] [DOI: 10.1016/j.yjsbx.2021.100047] |
457.0 GB | 3.06 Å |
| 2020-11-20 |  |
Cryo-ET of actin bundles induced by full length vinculin [2 tilt series in MRC format] | Ohad Medalia OM [Pubmed: 33185186] [DOI: 10.7554/eLife.53990] |
4.0 GB | 14.2 Å |
| 2021-03-24 |  |
Jack bean urease imaged at 49kX nominal magnification [239 multi-frame micrographs composed of 30 frames each in TIFF format] | Feathers JR, Spoth KA, Fromme JC [Pubmed: 33817625] [DOI: 10.1016/j.yjsbx.2021.100047] |
169.3 GB | 2.77 Å |
| 2020-11-18 |  |
2.05 angstrom resolution structure determination of sulfur oxygenase reductase using 200kV cryo-EM [2558 multi-frame micrographs composed of 50 frames each in MRC format] | Moriya T, Adachi N, Sato Y, Arakawa T, Kawasaki M, Yamada C, Fushinobu S, Senda T [Pubmed: 32775998] [DOI: 10.1016/j.yjsbx.2020.100030] |
1.7 TB | 2.05 - 2.24 Å |
| 2022-06-22 |  |
Cryo-EM structure of a dimeric B-Raf:14-3-3 complex reveals asymmetry in the active sites of B-Raf kinases [multiple data sets in MRCS and MRC formats] | Kondo Y, Ognjenovic J, Banerjee S, Karandur D, Merk A, Kulhanek K, Wong K, Roose JP, Subramaniam S, Kuriyan J [Pubmed: 31604311] [DOI: 10.1126/science.aay0543] |
934.3 GB | 3.9 Å |
| 2020-11-13 |  |
Cryo electron microscopy of RagAB from P. gingivalis solubilised in DDM [3635 multi-frame micrographs composed of 48 frames each in MRC format] | White JBR [Pubmed: 32393857] [DOI: 10.1038/s41564-020-0716-y] |
1.0 TB | 3.3 - 3.4 Å |
| 2021-08-13 |  |
Serial electron diffraction from hen egg-white lysozyme [34 diffraction images in BIG DATA VIEWER HDF5 format] | Bücker R, Hogan-Lamarre P, Mehrabi P, Schulz EC [Pubmed: 32081905] [DOI: 10.1038/s41467-020-14793-0] |
17.7 GB | 1.8 Å |
| 2021-02-05 |  |
Affinity-purified RqcP/YabO-ribosome-associated quality control complexes from Bacillus subtilis [5416 multi-frame micrographs composed of 20 frames each in TIFF format] | Crowe-McAuliffe CT, Takada H, Murina V, Atkinson GC, Wilson DN, Hauryliuk V [Pubmed: 33259810] [DOI: 10.1016/j.molcel.2020.11.002] |
358.1 GB | 2.6 - 4.9 Å |
| 2021-02-05 |  |
Affinity-purified RqcH-ribosome-associated quality control complexes from Bacillus subtilis [7178 multi-frame micrographs composed of 20 frames each in TIFF format] | Crowe-McAuliffe CT, Takada H, Murina V, Atkinson GC, Wilson DN, Hauryliuk V [Pubmed: 33259810] [DOI: 10.1016/j.molcel.2020.11.002] |
514.6 GB | 2.6 - 3.5 Å |
| 2021-02-12 |  |
Negative-stained transmission electron microscopy of the MTA-HDAC-MBD core complex purified from EXPI cells [325 micrographs in MRC format] | Mackay JP, Landsberg MJ, Jackman MJ [Pubmed: 33264611] [DOI: 10.1016/j.celrep.2020.108450] |
20.3 GB | 29.0 Å |
| 2021-02-12 |  |
Negative-stained transmission electron microscopy of the nucleosome and deacetylase complex purified from murine erythroleukemia cells. [400 micrographs in MRC format] | Mackay JP, Landsberg MJ, Jackman MJ [Pubmed: 33264611] [DOI: 10.1016/j.celrep.2020.108450] |
25.0 GB | 14.0 Å |
| 2021-02-19 |  |
Negative-stained transmission electron microscopy of the nucleosome remodelling and deacetylase complex purified from murine erythroleukemia cells. [1323 micrographs in MRC format] | Mackay JP, Landsberg MJ, Jackman MJ [Pubmed: 33264611] [DOI: 10.1016/j.celrep.2020.108450] |
82.7 GB | 14.0 Å |
| 2020-12-09 |  |
Single particle cryo-EM dataset for MlaFEDB from E. coli in nanodisc [multiple data sets in MRC and MRCS formats] | Coudray N, Isom GL, MacRae M, Saiduddin MN, Bhabha G, Ekiert DC [Pubmed: 33236984] [DOI: 10.7554/eLife.62518] |
996.3 GB | 3.05 Å |
| 2020-11-13 |  |
Single particle cryoEM of Streptococcus thermophilus SHP pheromone receptor Rgg3 in complex with SHP3 [1464 multi-frame micrographs composed of 40 frames each in MRC format] | Petrou VI, Capodagli GC, Kaelber JT, Neiditch MB [Pubmed: 32907945] [DOI: 10.1073/pnas.2008427117] |
3.0 TB | 2.95 Å |
