Electron Microscopy Public Image Archive
Electron Microscopy Public Image Archive
The EMPIAR-PDBj team at Osaka University assists Asian EM researchers with the transfer of big EM image data to EMPIAR. Instead of sending the data directly to the EBI (UK) via the internet, hard drives can also be sent to Osaka University by postal mail or via a courier service. As an alternative, internet transfer to our server in Osaka is also available. If you would like to take advantage of our submission services, please contact us first by e-mail before sending the data to us.
| Release date | Imageset | Title | Authors and references | Size | Resolution |
|---|---|---|---|---|---|
| 2023-02-01 |  |
Human cytoplasmic dynein bound to Lis1 [multiple data sets in TIFF format] | Reimer JM, DeSantis ME, Reck-Peterson SL, Leschziner AE [Pubmed: 36692009] [DOI: 10.7554/eLife.84302] |
983.3 GB | 3.97 - 4.0 Å |
| 2020-07-24 |  |
Human delta protocadherin 1 full ectodomains on membranes, tomogram 1 [multiple data sets in MRC format] | Harrison OJ, Brasch J, Katsamba PS, Ahlsen G, Noble AJ, Dan H, Sampogna R, Potter CS, Carragher B, Honig B, Shapiro L [Pubmed: 32101743] [DOI: 10.1016/j.celrep.2020.02.003] |
247.7 GB | — |
| 2020-10-09 |  |
Human delta protocadherin 1 full ectodomains on membranes, tomogram 2 [multiple data sets in TIFF, JPEG and MRC formats] | Harrison OJ, Brasch J, Katsamba PS, Ahlsen G, Noble AJ, Dan H, Sampogna R, Potter CS, Carragher B, Honig B, Shapiro L [Pubmed: 32101743] [DOI: 10.1016/j.celrep.2020.02.003] |
230.3 GB | — |
| 2020-07-21 |  |
Human delta protocadherin 1 full ectodomains on membranes, tomogram 3 [multiple data sets in MRC and TIFF formats] | Harrison OJ, Brasch J, Katsamba PS, Ahlsen G, Noble AJ, Dan H, Sampogna R, Potter CS, Carragher B, Honig B, Shapiro L [Pubmed: 32101743] [DOI: 10.1016/j.celrep.2020.02.003] |
106.5 GB | — |
| 2020-07-28 |  |
Human delta protocadherin 10 full ectodomains on membranes, tomogram 1 [multiple data sets in TIFF and MRC formats] | Harrison OJ, Brasch J, Katsamba PS, Ahlsen G, Noble AJ, Dan H, Sampogna R, Potter CS, Carragher B, Honig B, Shapiro L [Pubmed: 32101743] [DOI: 10.1016/j.celrep.2020.02.003] |
599.5 GB | — |
| 2020-07-28 |  |
Human delta protocadherin 10 full ectodomains on membranes, tomogram 2 [1 tilt series in MRC format] | Harrison OJ, Brasch J, Katsamba PS, Ahlsen G, Noble AJ, Dan H, Sampogna R, Potter CS, Carragher B, Honig B, Shapiro L [Pubmed: 32101743] [DOI: 10.1016/j.celrep.2020.02.003] |
104.6 GB | — |
| 2020-07-24 |  |
Human delta protocadherin 10 full ectodomains on membranes, tomogram 3 [1 tilt series in MRC format] | Harrison OJ, Brasch J, Katsamba PS, Ahlsen G, Noble AJ, Dan H, Sampogna R, Potter CS, Carragher B, Honig B, Shapiro L [Pubmed: 32101743] [DOI: 10.1016/j.celrep.2020.02.003] |
55.1 GB | — |
| 2023-07-25 |  |
Human dimeric alpha-catenin binding to F-actin [multiple data sets in MRC and TIFF formats] | Rangarajan ES, Smith EW, Izard T [Pubmed: 36928388] [DOI: 10.1038/s42003-023-04610-x] |
10.6 TB | 2.7 - 2.77 Å |
| 2023-01-19 |  |
Human heparan sulfate polymerase complex EXT1-EXT2 [7046 micrographs in MRC format] | Leisico F, Omeiri J, Hons M, Schoehn G, Lortat-Jacob H, Wild R [Pubmed: 36402845] [DOI: 10.1038/s41467-022-34882-6] |
618.7 GB | 2.8 Å |
| 2019-03-18 |  |
Human methemoglobin movies obtained using Talos Arctica operating at 200 kV equipped with a K2 [1665 multi-frame micrographs composed of 44 frames each in MRC format] | Herzik Jr MA, Wu M, Lander GC [Pubmed: 30833564] [DOI: 10.1038/s41467-019-08991-8] |
1.9 TB | 2.8 - 3.2 Å |
| 2024-04-24 |  |
Human methylenetetrahydrofolate reductase plus SAM [multiple data sets in EER format] | Blomgren LKM, Basle A, McCorvie TJ [DOI: 10.1038/s41467-024-47174-y] |
1012.6 GB | 2.91 Å |
| 2019-09-30 |  |
Human pre-B spliceosome and U4/U6.U5 tri-snRNP [multiple data sets in MRC and MRCS formats] | Charenton C, Wilkinson ME, Nagai K [Pubmed: 30975767] [DOI: 10.1126/science.aax3289] |
2.3 TB | 2.9 - 28.0 Å |
| 2021-04-22 |  |
Human thyroglobulin [multiple data sets in TIFF format] | Coscia F, Taler-Vercic A, Chang VT, Sinn L, O'Reilly FJ, Izore T, Renko M, Berger I, Rappsilber J, Turk D, Lowe J [Pubmed: 32025030] [DOI: 10.1038/s41586-020-1995-4] |
1.7 TB | 3.6 Å |
| 2020-09-02 |  |
ISWI-NCP complex in the ADP-bound state [stack of 168430 particles in MRCS format] | Yan L, Wu H, Li X, Gao N, Chen Z [Pubmed: 32123390] [DOI: 10.1038/s41594-020-0388-6] |
36.2 GB | 2.9 Å |
| 2020-09-03 |  |
ISWI-NCP complex in the ADPBeF-bound state [stack of 166165 particles in MRCS format] | Yan L, Wu H, Li X, Gao N, Chen Z [Pubmed: 30872815] [DOI: 10.1038/s41594-019-0199-9] |
41.7 GB | 3.37 Å |
| 2021-04-14 |  |
Identification of a conserved virion-stabilizing network inside the interprotomer pocket of enteroviruses [multiple data sets in MRC format] | Flatt JW, Domanska A, Seppälä AL, Butcher SJ [Pubmed: 33637854] [DOI: 10.1038/s42003-021-01779-x] |
3.5 TB | 2.7 - 3.4 Å |
| 2019-08-07 |  |
Identification of a druggable VP1-VP3 interprotomer pocket in the capsid of enteroviruses [2120 micrographs in MRC format] | Geraets JA, Flatt JW, Domanska A, Butcher SJ [Pubmed: 31185007] [DOI: 10.1371/journal.pbio.3000281] |
2.2 TB | 4.0 Å |
| 2021-12-14 |  |
Identifying long-range synaptic inputs using genetically encoded labels and volume electron microscopy [6 multi-frame micrographs composed of 1 frames each in TIFF format] | Ayuso-Jimeno IP, Ronchi P, Wang T, Gallori CE, Gross CT [Pubmed: 35715545] [DOI: 10.1038/s41598-022-14309-4] |
68.7 GB | — |
| 2023-06-23 |  |
IgG3-C1-C4b complex on a lipid bilayer [stack of 2561 particles in MRC format] | Abendstein LA, Sharp THS | 160.1 GB | 29.0 - 44.0 Å |
| 2019-08-28 |  |
Improved applicability and robustness of fast cryo-electron tomography data acquisition [12 tilt series in MRC format] | Eisenstein F, Danev R, Pilhofer M [Pubmed: 31425790] [DOI: 10.1016/j.jsb.2019.08.006] |
21.6 GB | 9.0 Å |
| 2023-06-30 |  |
In situ X-ray assisted electron microscopy staining for large biological samples [33 multi-frame micrographs composed of 1 frames each in TIFF format] | Ströh S, Hammerschmith EW, Tank DW, Seung HS, Wanner AA [Pubmed: 36263931] [DOI: 10.7554/elife.72147] |
981.6 GB | — |
| 2022-04-19 |  |
In situ architecture of the lipid transport protein VPS13C at ER-lysosomes membrane contacts [5 tilt series in MRC format] | Cai S [Pubmed: 35858323] [DOI: 10.1073/pnas.2203769119] |
29.5 GB | 47.0 Å |
| 2024-04-09 |  |
In situ cryo-ET dataset of Chlamydomonas reinhardtii prepared using cryo-plasmaFIB milling [multiple data sets in EER and MRC formats] | Kelley R, Khavnekar S, Zhang X, Obr M, Chakraborty S, Koh AF, Heebner J, Righetto R, Waltz F, McCafferty C, Van den Hoek H, Wietrzynski W, Van Der Stappen P, Michael A, Van Dorst S, Tagiltsev G, Beck F, Zhong E, Wan W, Briggs J, Plitzko J, Engel B, Kotecha A [Pubmed: 37613825] [DOI: 10.1093/micmic/ozad067.480] |
27.7 TB | — |
| 2023-08-24 |  |
In situ cryo-ET dataset of S. cerevisiae prepared using cryo-plasmaFIB milling [260 tilt series in MRC format] | Khavnekar S, Kelley R, Kotecha A [DOI: 10.1101/2023.08.18.553799] |
3.0 TB | 4.3 - 4.7 Å |
| 2024-01-11 |  |
In situ cryo-ET structure of phycobilisome–photosystem II supercomplex from red alga [60 reconstructed volumes in MRC format] | Meijing Li ML, Jianfei Ma JM [Pubmed: 34515634] [DOI: 10.7554/eLife.69635] |
113.9 GB | — |
