EMPIAR-13021 - Cryo electron micrographs of potato virus Y [725 micrographs in MRC format]

EMPIAR-13021

Cryo electron micrographs of potato virus Y [725 micrographs in MRC format]

Publication:

Structural basis for the multitasking nature of the potato virus Y coat protein

Kežar A, Kavčič L, Polák M, Nováček J, Gutiérrez-Aguirre I, Žnidarič MT, Coll A, Stare K, Gruden K, Ravnikar M, Pahovnik D, Žagar E, Merzel F, Anderluh G, Podobnik M

Science advances 5 (2019)

PMID: 31328164

DOI: 10.1126/sciadv.aaw3808

Related EMDB entry:

EMD-0297

Deposited:

2025-08-22

Released:

2025-10-08

Last modified:

2025-10-08

Imageset size:

45.31 GB

Imageset DOI:

10.6019/EMPIAR-13021

Experimental metadata:

Download xml json

Contains:

micrographs - single frame

Image Sets

1. Single-frame cryo-EM micrographs of potato virus Y (PVY)

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

725

Image size:

(4096, 4096)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.063, 1.063)

Details:

Cryo-EM micrographs collected on TFS Krios microscope (300 kV) in integrating mode with Falcon2 direct electron detector at pixel size 1.063 A. Total electron dose of 48.6 e-/Å2.

Files:

Archives and downloads the selected files into an uncompressed zip file.

Depending on the number and size of files to be downloaded, this can take an enormous amount of time. Also, this feature is unstable and may not work properly, and checksums of downloaded files are not verified.

We recommend using rsync, aspera, globus, etc.

Download a list of selected files.

It is possible to download files by specifying the file list with rsync command, etc.

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Browse All Files

Quick Links

Browse EMPIAR

Sample Preparation Widget

Volume Browser

Tomo Viewer Prototype

Claim entries to your ORCiD

Talks and Tutorials

EMPIAR Quick tour

Publications

Re-use study

Statistics

EMPIAR in the news

COVID-19 Data Portal

EMDB

BioImage Archive

PDBe

EMNavigator@PDBj

PDBj

Citations

AlignPCA-2D: PCA-reduced Euclidean vector alignment for 2D classification in cryo-EM.

Ramírez-Aportela E, Zarrabeitia OL, Fonseca YC, Ceska T, Subramaniam S, Carazo JM, Sorzano COS. (2026)

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

Helical reconstruction of amyloids in cryoSPARC.

Schaefer JH, O'Neill RT, Donnelly JP, Powers ET, Kelly JW, Lander GC. (2026)

An unattended image-processing pipeline for on-the-fly quality assessment and 3D exploration in cryo-EM.

Marchán Torres D, Conesa P, Garcia A, Iceta M, Broche L, Gragera M, Linares R, Kwong HS, Chichón FJ, Svensson O, Arranz R, Effantin G, Kandiah E, Carazo JM, Sorzano COS. (2026)

CryoFSL: an annotation-efficient, few-shot learning framework for robust protein particle picking in cryo-electron microscopy micrographs.

Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model.

Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

See all citations

Protein Data Bank Japan News

[2026-09-02]

283 new PDB entries have been released on 2026-09-02.

[2026-08-28]

[wwPDB] Remediation of Metal-containing PDB Entries and CCDs

[2026-08-18]

[wwPDB] Paper Published about the PDB Beta Archive

[2026-08-10]

[wwPDB] New tools support deposition of structures to the wwPDB PDB and 3DEM Core Archives directly from structure determination software packages

[2026-08-02]

[wwPDB] wwPDB Events at IUCr