EMPIAR-13021 - Cryo electron micrographs of potato virus Y [725 micrographs in MRC format]

EMPIAR-13021

Cryo electron micrographs of potato virus Y [725 micrographs in MRC format]

Publication:

Structural basis for the multitasking nature of the potato virus Y coat protein

Kežar A, Kavčič L, Polák M, Nováček J, Gutiérrez-Aguirre I, Žnidarič MT, Coll A, Stare K, Gruden K, Ravnikar M, Pahovnik D, Žagar E, Merzel F, Anderluh G, Podobnik M

Science advances 5 (2019)

PMID: 31328164

DOI: 10.1126/sciadv.aaw3808

Related EMDB entry:

EMD-0297

Deposited:

2025-08-22

Released:

2025-10-08

Last modified:

2025-10-08

Imageset size:

45.31 GB

Imageset DOI:

10.6019/EMPIAR-13021

Experimental metadata:

Download xml json

Contains:

micrographs - single frame

Image Sets

1. Single-frame cryo-EM micrographs of potato virus Y (PVY)

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

725

Image size:

(4096, 4096)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(1.063, 1.063)

Details:

Cryo-EM micrographs collected on TFS Krios microscope (300 kV) in integrating mode with Falcon2 direct electron detector at pixel size 1.063 A. Total electron dose of 48.6 e-/Å2.

Files:

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Citations

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

CryoFSL: an annotation-efficient, few-shot learning framework for robust protein particle picking in cryo-electron microscopy micrographs.

Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model.

Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Dual site targeting of the bacterial 70S ribosome by tetracyclines.

Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

See all citations

Protein Data Bank Japan News

[2026-06-10]

333件のPDBエントリーが新たに公開されました。（2026-06-10付）