EMPIAR-12567
Cryo electron micrographs of Arabidopsis thaliana H2A-nucleosome with Arabidopsis native 147bp DNA 15.2.2 [multiple data sets in TIFF, MRC and MRCS formats]
Publication:

Structural and functional interrelationships of histone H2A and its variants H2A.Z and H2A.W in Arabidopsis

Wang Y

(---)

Related EMDB entry:
Deposited:
2025-02-14
Released:
2026-07-21
Last modified:
2026-07-21
Imageset size:
638.11 GB
Imageset DOI:
Experimental metadata:
Download xml json
Contains:
  • micrographs - multiframe
  • micrographs - single frame
  • picked particles - single frame - unprocessed
1. Cryo electron micrographs of Arabidopsis thaliana H2A-nucleosome with Arabidopsis native 147bp DNA 15.2.2
Category:
micrographs - multiframe
Image format:
TIFF
No. of images or tilt series:
1112
Image size:
(11520, 8184)
Pixel type:
UNSIGNED BYTE
Pixel spacing:
(1.1, 1.1)
Details:
---
Files:
Loading...
2. Gain reference for cryo electron micrographs of Arabidopsis thaliana H2A-nucleosome with Arabidopsis native 147bp DNA 15.2.2
Category:
micrographs - single frame
Image format:
MRC
No. of images or tilt series:
1
Image size:
(11520, 8184)
Pixel type:
16 BIT FLOAT
Pixel spacing:
(1.1, 1.1)
Details:
This gain reference doesn't need rotation and flipping.
Files:
Loading...
3. Particles for cryo electron micrographs of Arabidopsis thaliana H2A-nucleosome with Arabidopsis native 147bp DNA 15.2.2
Category:
picked particles - single frame - unprocessed
Image format:
MRCS
No. of images or tilt series:
990
Image size:
(256, 256)
Pixel type:
16 BIT FLOAT
Pixel spacing:
(1.1, 1.1)
Details:
The folder cryosparc/J20 is "Imported particles" of CryoSPARC-v4.3.1, and the particles is imported from "Particle extraction" of relion-v3.1.3.
The folder cryosparc/J93 is "Homogeneous Refinement" of CryoSPARC-v4.3.1, and this "Homogeneous Refinement" which imposed C1 symmetry is at a resolution of 3.34 angstrom.
The folder cryosparc/J133 is "Homogeneous Refinement" of CryoSPARC-v4.3.1, and this "Homogeneous Refinement" which imposed C2 symmetry is at a resolution of 3.15 angstrom.
Files:
Loading...
Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)
Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)
He L, Bartesaghi A. (2026)
Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)
Kong L, Zottig X, Elferich J, Grigorieff N. (2026)
Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)
Gyawali R, Dhakal A, Wang L, Cheng J. (2026)
Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG. (2026)
Jones HN, Deshmukh A, Pande K. (2026)
Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)