EMPIAR logo

Electron Microscopy Public Image Archive

EMPIAR-13423
Cryo-EM structure of the aspartate:alanine antiporter AspT WT [12357 multi-frame micrographs composed of 40 frames each in TIFF format]
Publication:

Elucidation of the structure and molecular mechanisms of the aspartate antiporter

Nanatani K, Guan L, Kanno R, Kawabata T, Watanabe S, Katsube S, Hariharan P, Hidaka M, Yamanaka T, Toda K, Fujiki T, Kunii K, Miyamoto A, Chiba F, Ogasawara S, Murata T, Inaba K, Mitsuoka K, Abe K, Yamamoto M, Koshiba S

Communications biology 8 (2025)

PMID: 40998974

Related EMDB entry:
EMD-64982
Deposited:
2025-10-01
Released:
2026-04-08
Last modified:
2026-04-08
Imageset size:
8.68 TB
Imageset DOI:
10.6019/EMPIAR-13423
Experimental metadata:
Download xml json
Deposited via PDBj
Contains:
  • micrographs - multiframe
Image Sets
1. Cryo-EM structure of the aspartate:alanine antiporter AspT WT
Category:
micrographs - multiframe
Image format:
TIFF
No. of images or tilt series:
12357
Image size:
(4096, 4096)
Pixel type:
UNSIGNED 16 BIT INTEGER
Pixel spacing:
(0.8448, 0.8448)
Details:
- Microscope: TFS Titan Krios
- Detector: TFS Falcon 3
- Voltage: 300 kV
- Spherical aberration: 2.7
- Dose rate: 1.0 e / A**2 / frame
- no gain file
Files:
Loading...
Browse All Files
Quick Links
Browse EMPIAR
Sample Preparation Widget
Volume Browser
Tomo Viewer Prototype
Claim entries to your ORCiD
Talks and Tutorials
EMPIAR Quick tour
Publications
Re-use study
Statistics
EMPIAR in the news
Contact us
COVID-19 Data Portal
EMDB
BioImage Archive
PDBe
EMNavigator@PDBj
PDBj
Citations
prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.
He L, Bartesaghi A. (2026)
CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.
Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)
Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.
Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)
CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.
Gyawali R, Dhakal A, Wang L, Cheng J. (2026)
Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.
Jones HN, Deshmukh A, Pande K. (2026)
CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting
Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)
Point cloud deformation modeling for particle selection following cryo-EM 2D classification.
Wang X, Mo Z, Li F, Zhang F, Wan X. (2026)
ICECREAM: high-fidelity equivariant cryo-electron tomography.
Kishore V, Debarnot V, Righetto RD, Engel BD, Dokmanić I. (2026)
CryoSift: an accessible and automated CNN-driven tool for cryo-EM 2D class selection.
Schäfer JH, Calza A, Hom K, Damodar P, Peng R, Bogdanović N, Lander GC, Stagg SM, Cianfrocco MA. (2025)
The vault associates with membranes in situ.
Geißler K, Kreysing JP, Wang Y, Glushkova D, Obarska-Kosinska A, Hoffmann PC, Böhm S, Schmidt A, Meier-Credo J, Langer JD, Hummer G, Beck M. (2026)
See all citations
Protein Data Bank Japan News
[2026-05-06]
276件のPDBエントリーが新たに公開されました。（2026-05-06付）
[2026-04-30]
[wwPDB] 2027年7月21日以降に公開されるエントリーについてPDB DOIの構文が新しくなります
[2026-04-26]
[wwPDB] 2027年7月21日に、PDBベータアーカイブが現行アーカイブに置き換わります
[2026-04-21]
[wwPDB] PDBとEMDBエントリーの公開済みの検証レポートを更新しました
[2026-03-30]
PDBj Newsletter Vol.26公開のお知らせ
[2026-03-13]
[wwPDB] CASP17（2026）ターゲットを募集しています
[2026-03-07]
[wwPDB] PDBエントリーが25万件を達成しました
[2026-02-11]
[wwPDB] 新しいPDBベータアーカイブをテスト用にご利用ください
[2026-01-20]
[wwPDB] EMDBエントリーが年間１万件を突破しました
[2026-01-13]
[wwPDB] データ処理についてのwwPDBサイト別の担当地域
See all news