EMPIAR-13423 - Cryo-EM structure of the aspartate:alanine antiporter AspT WT [12357 multi-frame micrographs composed of 40 frames each in TIFF format]

EMPIAR-13423

Cryo-EM structure of the aspartate:alanine antiporter AspT WT [12357 multi-frame micrographs composed of 40 frames each in TIFF format]

Publication:

Elucidation of the structure and molecular mechanisms of the aspartate antiporter

Nanatani K, Guan L, Kanno R, Kawabata T, Watanabe S, Katsube S, Hariharan P, Hidaka M, Yamanaka T, Toda K, Fujiki T, Kunii K, Miyamoto A, Chiba F, Ogasawara S, Murata T, Inaba K, Mitsuoka K, Abe K, Yamamoto M, Koshiba S

Communications biology 8 (2025)

PMID: 40998974

DOI: 10.1038/s42003-025-08676-7

Related EMDB entry:

EMD-64982

Deposited:

2025-10-01

Released:

2026-04-08

Last modified:

2026-04-08

Imageset size:

8.68 TB

Imageset DOI:

10.6019/EMPIAR-13423

Experimental metadata:

Download xml json

Deposited via PDBj

Contains:

micrographs - multiframe

Image Sets

1. Cryo-EM structure of the aspartate:alanine antiporter AspT WT

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

12357

Image size:

(4096, 4096)

Pixel type:

UNSIGNED 16 BIT INTEGER

Pixel spacing:

(0.8448, 0.8448)

Details:

- Microscope: TFS Titan Krios
- Detector: TFS Falcon 3
- Voltage: 300 kV
- Spherical aberration: 2.7
- Dose rate: 1.0 e / A**2 / frame
- no gain file

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Citations

AlignPCA-2D: PCA-reduced Euclidean vector alignment for 2D classification in cryo-EM.

Ramírez-Aportela E, Zarrabeitia OL, Fonseca YC, Ceska T, Subramaniam S, Carazo JM, Sorzano COS. (2026)

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

Helical reconstruction of amyloids in cryoSPARC.

Schaefer JH, O'Neill RT, Donnelly JP, Powers ET, Kelly JW, Lander GC. (2026)

An unattended image-processing pipeline for on-the-fly quality assessment and 3D exploration in cryo-EM.

Marchán Torres D, Conesa P, Garcia A, Iceta M, Broche L, Gragera M, Linares R, Kwong HS, Chichón FJ, Svensson O, Arranz R, Effantin G, Kandiah E, Carazo JM, Sorzano COS. (2026)

CryoFSL: an annotation-efficient, few-shot learning framework for robust protein particle picking in cryo-electron microscopy micrographs.

Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model.

Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

See all citations

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