EMPIAR-13078 - Cryo electron tomography of HIV-1 cores isolated by sedimentation through sucrose gradient [14 tilt series in TIFF format]

EMPIAR-13078

Cryo electron tomography of HIV-1 cores isolated by sedimentation through sucrose gradient [14 tilt series in TIFF format]

Publication:

Structural bases for integrase-RNA binding and retention of viral RNA within HIV-1 capsid cores

Singer RM, Zhen L, Rey SJ, Hope J, Chenavier F, Cook JN, Punch E, Smith J, Zhou Z, Maslen S, Masino L, Nans A, Skehel M, Taylor AI, Zanetti G, Zhang P, Perilla RJ, Engelman NA, Cherepanov P

(---)

Related EMDB entry:

EMD-55409

Deposited:

2025-10-10

Released:

2025-12-12

Last modified:

2025-12-12

Imageset size:

11.03 GB

Imageset DOI:

10.6019/EMPIAR-13078

Experimental metadata:

Download xml json

Contains:

tilt series

Image Sets

1. Unaligned multi-frame micrographs from tilt series of HIV-1 cores, associated mdoc files, and gain reference

Category:

tilt series

Image format:

TIFF

No. of images or tilt series:

Image size:

(4096, 4096)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(1.56, 1.56)

Details:

Each tilt image is comprised of 6 unaligned raw movie frames in TIFF format without gain correction. Gain reference is supplied as a separate file. Dose per tilt image is 2.54 e/A2 and total dose for each tilt series is 104 e/A2. Tilt azimuth is is 95 degrees.

Files:

選択したファイルを無圧縮zipファイルにアーカイブ化してダウンロードします。

ダウンロードするファイル数やサイズによっては、膨大な時間がかかります。また、この機能は不安定で正常に動作しない可能性があり、ダウンロードされたファイルのチェックサムは検証されません。

rsync、aspera、globus 等の利用をおすすめします。

選択したファイルのリストをダウンロードします。

rsyncコマンド等でファイルリストを指定してダウンロードすることが可能です。

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

Browse All Files

Quick Links

Browse EMPIAR

Sample Preparation Widget

Volume Browser

Tomo Viewer Prototype

Claim entries to your ORCiD

Talks and Tutorials

EMPIAR Quick tour

Publications

Re-use study

Statistics

EMPIAR in the news

COVID-19 Data Portal

EMDB

BioImage Archive

PDBe

EMNavigator@PDBj

PDBj

Citations

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model.

Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

Dual site targeting of the bacterial 70S ribosome by tetracyclines.

Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

Point cloud deformation modeling for particle selection following cryo-EM 2D classification.

Wang X, Mo Z, Li F, Zhang F, Wan X. (2026)

ICECREAM: high-fidelity equivariant cryo-electron tomography.

Kishore V, Debarnot V, Righetto RD, Engel BD, Dokmanić I. (2026)