EMPIAR-11708 - Cryo-EM structure of the histamine-bound histamine H4 receptor and Gq complex [multiple data sets in TIFF format]

EMPIAR-11708

Cryo-EM structure of the histamine-bound histamine H4 receptor and Gq complex [multiple data sets in TIFF format]

Publication:

Structural insights into the agonists binding and receptor selectivity of human histamine H₄ receptor

Im D, Kishikawa JI, Shiimura Y, Hisano H, Ito A, Fujita-Fujiharu Y, Sugita Y, Noda T, Kato T, Asada H, Iwata S

Nature communications 14 (2023)

PMID: 37863901

DOI: 10.1038/s41467-023-42260-z

Related EMDB entry:

EMD-33785 EMD-33786

Deposited:

2023-09-29

Released:

2024-08-23

Last modified:

2025-08-22

Imageset size:

3.09 TB

Imageset DOI:

10.6019/EMPIAR-11708

Experimental metadata:

Download xml json

Deposited via PDBj

Contains:

micrographs - multiframe

Image Sets

1. Cryo-EM structure of the histamine-bound histamine H4 receptor and Gq complex

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

6300

Image size:

(5760, 4092)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.88, 0.88)

Details:

- Please use 'CountCDSRef_20220210_IwataLab_96_0000_Feb10_14.54.40.mrc' as a gain reference without rotation or flipping in RELION (Y flipping is necessary for CryoSPARC).
- Movies were recorded on a Titan Krios with a Cs-corrector.
- The residual Cs value reported by the Cs corrector is 0.06216 mm.
- Four digits (0000 to 0017) in the file names represent image shift directions but grouping was not applied during processing.
- Flux at sample: ~ 1 e/A2/frame

Files:

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rsync、aspera、globus 等の利用をおすすめします。

選択したファイルのリストをダウンロードします。

rsyncコマンド等でファイルリストを指定してダウンロードすることが可能です。

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

2. Cryo-EM structure of the imetit-bound histamine H4 receptor and Gq complex

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

6462

Image size:

(5760, 4092)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.88, 0.88)

Details:

- Please use 'CountCDSRef_20211202_IwataLab_99_0000_Dec02_14.17.09.mrc' as a gain reference without rotation or flipping in RELION (Y flipping is necessary for CryoSPARC).
- Movies were recorded on a Titan Krios with a Cs-corrector.
- The residual Cs value reported by the Cs corrector is 0.04223 mm.
- Four digits (0000 to 0017) in the file names represent image shift directions but grouping was not applied during processing.
- Flux at sample: ~ 1 e/A2/frame

Files:

選択したファイルを無圧縮zipファイルにアーカイブ化してダウンロードします。

rsync、aspera、globus 等の利用をおすすめします。

選択したファイルのリストをダウンロードします。

rsyncコマンド等でファイルリストを指定してダウンロードすることが可能です。

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Protein Data Bank Japan News

[2026-06-10]

333件のPDBエントリーが新たに公開されました。（2026-06-10付）