EMPIAR-11092 - Micrographs of PI3-kinase SH3 amyloid fibrils [multiple data sets in MRC format]

EMPIAR-11092

Micrographs of PI3-kinase SH3 amyloid fibrils [multiple data sets in MRC format]

Publication:

Atomic structure of PI3-kinase SH3 amyloid fibrils by cryo-electron microscopy

Röder C, Vettore N, Mangels LN, Gremer L, Ravelli RBG, Willbold D, Hoyer W, Buell AK, Schröder GF

Nature communications 10 (2019)

PMID: 31434882

DOI: 10.1038/s41467-019-11320-8

Related EMDB entry:

EMD-4727

Deposited:

2020-03-20

Released:

2022-07-26

Last modified:

2022-07-26

Imageset size:

32.02 GB

Imageset DOI:

10.6019/EMPIAR-11092

Experimental metadata:

Download xml json

Contains:

micrographs - single frame

Image Sets

1. PI3-kinase SH3 amyloid fibrils, MotionCor2-aligned dose-weighted averages

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

256

Image size:

(4096, 4096)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(0.935, 0.935)

Details:

These data are aligned average dose-weighted micrographs collected on a Technai Arctica at 200kV with a Falcon III detector operating in electron counting mode. Applied defocus values ranged from −1.5 to −2.25 µm. MotionCor2 was used to align 60 dose fractions that were taken with a total electron dose of ~26e-/Å². Only included are micrographs with resolution estimated by CTFFIND4 to be better than 5Å.

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2. PI3-kinase SH3 amyloid fibrils, MotionCor2-aligned non-dose-weighted averages

Category:

micrographs - single frame

Image format:

MRC

No. of images or tilt series:

256

Image size:

(4096, 4096)

Pixel type:

32 BIT FLOAT

Pixel spacing:

(0.935, 0.935)

Details:

These data are aligned average non-dose-weighted micrographs collected on a Technai Arctica at 200kV with a Falcon III detector operating in electron counting mode. Applied defocus values ranged from −1.5 to −2.25 µm. MotionCor2 was used to align 60 dose fractions that were taken with a total electron dose of ~26e-/Å². Only included are micrographs with resolution estimated by CTFFIND4 to be better than 5Å.

Files:

選択したファイルを無圧縮zipファイルにアーカイブ化してダウンロードします。

rsync、aspera、globus 等の利用をおすすめします。

選択したファイルのリストをダウンロードします。

rsyncコマンド等でファイルリストを指定してダウンロードすることが可能です。

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

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Protein Data Bank Japan News

[2026-06-10]

333件のPDBエントリーが新たに公開されました。（2026-06-10付）