EMPIAR-10676 - Krios G4 apoferritin test with K3/BioQuantum SerialEM BIS 3x3x4 [2484 multi-frame micrographs composed of 76 frames each in TIFF format]

EMPIAR-10676

Krios G4 apoferritin test with K3/BioQuantum SerialEM BIS 3x3x4 [2484 multi-frame micrographs composed of 76 frames each in TIFF format]

Publication:

Cryo-EM Performance Testing of Hardware and Data Acquisition Strategies

Danev R, Yanagisawa H, Kikkawa M

Microscopy (Oxford, England) (2021)

PMID: 33969878

DOI: 10.1093/jmicro/dfab016

Related EMDB entry:

EMD-31091

Deposited:

2021-03-23

Released:

2021-04-14

Last modified:

2021-06-30

Imageset size:

688.84 GB

Imageset DOI:

10.6019/EMPIAR-10676

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. Non-gain-normalized LZW-TIFF compressed movies of mouse heavy-chain apoferritin

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

2484

Image size:

(5760, 4092)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.1997, 0.1997)

Details:

The file "dataset_details_apoF_set2.txt" contains information about the experiment and the dataset. The gain reference "apoF_set2_gain.mrc" was prepared from the data. The particle star file "apoF_set2_data.star" from the last 3D auto-refinement contains particle coordinates and optical parameters.

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Citations

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

CryoFSL: an annotation-efficient, few-shot learning framework for robust protein particle picking in cryo-electron microscopy micrographs.

Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model.

Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Dual site targeting of the bacterial 70S ribosome by tetracyclines.

Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

See all citations

Protein Data Bank Japan News

[2026-06-10]

333件のPDBエントリーが新たに公開されました。（2026-06-10付）