EMPIAR-10596 - Human DPP9-CARD8 complex-VbP [multiple data sets in TIFF format]

EMPIAR-10596

Human DPP9-CARD8 complex-VbP [multiple data sets in TIFF format]

Publication:

Dipeptidyl peptidase 9 sets a threshold for CARD8 inflammasome formation by sequestering its active C-terminal fragment

Sharif H, Hollingsworth LR, Griswold AR, Hsiao JC, Wang Q, Bachovchin DA, Wu H

Immunity 54 (2021) 1392-1404.e10

PMID: 34019797

DOI: 10.1016/j.immuni.2021.04.024

Related EMDB entry:

EMD-22402

Deposited:

2020-12-13

Released:

2021-05-25

Last modified:

2022-02-15

Imageset size:

2.15 TB

Imageset DOI:

10.6019/EMPIAR-10596

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. Unaligned multi frame micographs of CARD8-DPP9-VbP-noTILT

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

1811

Image size:

(None, None)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.82, 0.82)

Details:

For CARD8-DPP9-VbP 1,811 movies were collected at varying defocus levels ranging between −1.1 to −3.4 μm. One shot was recorded for each of the four holes per stage movement through image shift. All movies were exposed with a total dose of 67.06 e-/Å2 for 1.5 s fractionated over 50 frames. "references" folder contains the references.

Files:

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rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

2. Unaligned multi frame micographs of CARD8-DPP9-VbP-TILT

Category:

micrographs - multiframe

Image format:

TIFF

No. of images or tilt series:

6642

Image size:

(None, None)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.82, 0.82)

Details:

For CARD8-DPP9-VbP tilt data, 6,642 movies at a stage tilt of 37° were collected at varying defocus levels ranging between −1.1 to −3.4 μm. One shot was recorded for each of the four holes per stage movement through image shift. All movies were exposed with a total dose of 67.06 e-/Å2 for 1.5 s fractionated over 50 frames. "references" folder contains the references.

Files:

選択したファイルを無圧縮zipファイルにアーカイブ化してダウンロードします。

rsync、aspera、globus 等の利用をおすすめします。

選択したファイルのリストをダウンロードします。

rsyncコマンド等でファイルリストを指定してダウンロードすることが可能です。

rsync -av --files-from=(path-to-filelist) rsync://empiar.pdbj.org/empiar/archive (path-to-destination)

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Citations

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

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Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model.

Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Dual site targeting of the bacterial 70S ribosome by tetracyclines.

Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

See all citations

Protein Data Bank Japan News

[2026-06-10]

333件のPDBエントリーが新たに公開されました。（2026-06-10付）