EMPIAR-10408 - Single particle cryo-EM dataset of mouse heavy chain apoferritin collected on cryoARM300 [3487 multi-frame micrographs composed of 80 frames each in MRC format]

EMPIAR-10408

Single particle cryo-EM dataset of mouse heavy chain apoferritin collected on cryoARM300 [3487 multi-frame micrographs composed of 80 frames each in MRC format]

Publication:

Assessing the JEOL CRYO ARM 300 for high-throughput automated single-particle cryo-EM in a multiuser environment

Fislage M, Shkumatov A, Stroobants AV, Efremov RG

IUCrJ 7 (2020) 707-718

PMID: 32695417

DOI: 10.1107/s2052252520006065

Related EMDB entry:

EMD-10675

Deposited:

2020-04-22

Released:

2020-12-09

Last modified:

2020-12-09

Imageset size:

486.67 GB

Imageset DOI:

10.6019/EMPIAR-10408

Experimental metadata:

Download xml json

Contains:

micrographs - multiframe

Image Sets

1. raw uncorrected multiframe micrographs of mouse heavy chain apoferritin

Category:

micrographs - multiframe

Image format:

MRC

No. of images or tilt series:

3487

Image size:

(3838, 3710)

Pixel type:

UNSIGNED BYTE

Pixel spacing:

(0.603, 0.603)

Details:

dataset of mouse heavy chain apoferritin collected on cryoARM300. 80 frames 0.1s exposure per frame, 0.6e/Å2. Data are in tif format, not gain corrected.
The gain reference file is CountRef_20190326_ApoFerritin_Au.mrc

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Citations

A variational framework with composite sparse regularization for cryo-electron tomography reconstruction.

Yu C, Xu Z, Zeng Q, Wan X, El-Messiry H, Zhang F, Han R. (2026)

CryoFSL: an annotation-efficient, few-shot learning framework for robust protein particle picking in cryo-electron microscopy micrographs.

Poudel B, Gyawali R, Dhakal A, Cheng J, Xu D. (2026)

CryoSIP: unleashing protein high-resolution Cryo-EM via semantic-instance collaborative picking.

Deng Y, Wang S, Xiang M, Li Y, Zhuo L, Cao D, Fu X, Zou Q. (2026)

prismPYP: Power-spectrum and image domain learning for self-supervised micrograph evaluation.

He L, Bartesaghi A. (2026)

Unbend, correction of local beam-induced sample motion in cryo-EM images using a 3D spline model.

Kong L, Zottig X, Elferich J, Grigorieff N. (2026)

Chart builder: an interactive tool for user driven data visualization in the electron microscopy data bank.

Fonseca N, Duraisamy AK, Wang Z, Somasundharam S, Tayebinia M, de Oliveira LC, Ma M, Turner J, Patwardhan A, Kleywegt GJ, Hartley M, Morris KL. (2026)

CryoVirusDB: An Annotated Dataset for AI-Based Virus Particle Identification in Cryo-EM Micrographs.

Gyawali R, Dhakal A, Wang L, Cheng J. (2026)

Dual site targeting of the bacterial 70S ribosome by tetracyclines.

Devarkar SC, Lomakin IB, Wang J, Grada A, Bunick CG. (2026)

Deep-learning methods for contrast enhancement and artifact reduction in cryo-electron tomography: a systematic analysis of the state of the art and proposed improvements.

Jones HN, Deshmukh A, Pande K. (2026)

CryoGS: High-Quality Cryo-EM Homogeneous Reconstruction by Gaussian Splatting

Zeng B, Liu S, Cheng S, Xu G, Fan H. (2026)

See all citations

Protein Data Bank Japan News

[2026-06-10]

333件のPDBエントリーが新たに公開されました。（2026-06-10付）